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47 protocols using safranin

1

Mitochondrial Membrane Potential Measurement

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Mitochondrial membrane potential was assessed as described (Chowdhury et al., 2015 (link)). In brief, Oxygraph-2k was used with O2k-Fluorescence LED2 module equipped with filter sets for safranin (excitation at 495 nm and emission at 587 nm). safranin (Sigma-Aldrich, S2255) dissolved in distilled water up to a final concentration of 2.5 μM. Isolated skeletal muscle mitochondria (65 μg/ml) were suspended in the mitochondrial respiration buffer (see “Measurement of H2O2 production”) including 2.5 μM safranin. The membrane potential was tracked live with the addition of ADP (2.5 mM), pyruvate (5 mM), glutamate (10 mM) and malate (5 mM) or ADP (2.5 mM), succinate (10 mM) and rotenone (0.5 μM). In a separate experiment, a standard curve was obtained by adding known amounts of safranin to the assay medium in the presence of mitochondria. The signal was then normalized (0–1) to detect changes after addition of substrates (2.5 μM safranin set as 1).
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2

Amikacin-loaded PLGA Nanoparticles

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Amikacin disulfate salt (Acros Organics) as well as, thymol (purity ≥98.5%), Safranin, p-iodonitrotetrazolium (INT) chloride, and Safranin were purchased from Sigma-Aldrich. PLGA (RESOMER RG 503 H, 50 : 50, Mw 24000–38000) was obtained from Boehringer Ingelheim Pharma GmbH&Co. Polyvinyl alcohol (PVAL) was obtained from Roche Diagnostics.
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3

Biofilm Quantification of E-Cigarette Aerosol Exposure

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TSB was pretreated with e-cigarette aerosols (10-s puff, 5-min exposure), and overnight cultures were diluted 1:10 in pretreated medium and incubated for 24 h in a 96-well plate (100 μL per well). After 24 h of incubation, plates were washed with deionized water and air dried at 37°C for 20 min. To stain the biofilm, safranin (65092B-95; Millipore Sigma, Darmstadt, Germany; 125 μL containing 6.04g/L safranin, 19% ethanol, and 1% methanol, diluted in water) was added to the wells and incubated at room temperature for 20 min. safranin was discarded, and the wells were washed with deionized water and air dried at 37°C. The biofilm was dissociated by resuspending in ethanol-acetone mix (80:20). The absorbance was read at OD490. Results were normalized to blanks, graphed, and analyzed on GraphPad Prism (Prism 8).
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4

Biofilm Quantification of E-Cigarette Aerosol Exposure

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TSB was pretreated with e-cigarette aerosols (10-s puff, 5-min exposure), and overnight cultures were diluted 1:10 in pretreated medium and incubated for 24 h in a 96-well plate (100 μL per well). After 24 h of incubation, plates were washed with deionized water and air dried at 37°C for 20 min. To stain the biofilm, safranin (65092B-95; Millipore Sigma, Darmstadt, Germany; 125 μL containing 6.04g/L safranin, 19% ethanol, and 1% methanol, diluted in water) was added to the wells and incubated at room temperature for 20 min. safranin was discarded, and the wells were washed with deionized water and air dried at 37°C. The biofilm was dissociated by resuspending in ethanol-acetone mix (80:20). The absorbance was read at OD490. Results were normalized to blanks, graphed, and analyzed on GraphPad Prism (Prism 8).
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5

Bacterial Identification Techniques

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Eosin methylene blue (EMB), thioglycollate broth, blood agar, barium chloride, sulfuric acid, crystal violate, safranin, lugol solution, acetone, ethanol, oxidase, and catalase reagents were purchased from Merck (Germany). API20E kit was obtained from Biomerieux (France). All other chemicals were analytic grade and of commercially available.
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6

Evaluating Chondrogenic and Osteogenic Potential

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The potential of BFP-MSCs and GDCs to differentiate into chondrogenic and osteogenic lineages was examined using the following procedures. 1×105 cells were cultured in each well of 4-well tissue culture plate for differentiation. When the cultures were 60-80% confluent, an appropriate differentiation kit (STEMPRO Differentiation Kit; GIBCO, USA) was used for differentiating the cells regarding the manufacturer’s instructions. On days 7, 14 and 21 post treatment, cells were stained with Alizarin red (Merck, Germany) and Safranin (Merck, Germany) for evaluating osteogenic and chondrogenic differentiation, respectively. For the control group, 1×105 cells were cultured with common media (DMEM and 10% FBS), without differentiation agents, and the same procedure of staining and RNA isolation was carried out.
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7

Antibacterial Graphene Oxide Preparation

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Lysogeny broth (LB), CASO broth,
safranin, sodium dodecyl sulfate
(SDS), phosphate buffer saline (PBS), and anhydrous tetrahydrofuran
(THF) were obtained from Merck (Diegem, Belgium). Ethanol 70% was
purchased from VWR international, and BacLight bacteria fluorescent
stain from Fisher Emergo (Landsmeer, Netherlands). All reagents were
used as received and had a minimum purity of 99.9%. E. coli (ATCC 8739), E. coli (ATCC 23716), Cronobacter
sakazakii
(ATCC 29544), and Staphylococcus aureus (ATCC 6538) strains from DSM-Z (Braunschweig, Germany). Polydimethylsiloxane
Sylgard 184 elastomer kit was purchased from Mavom N.V. (Schelle,
Belgium). Graphene oxide (GO) flakes synthesized following an improved
Hummer’s method29 (link) was provided from
Aachen-Maastricht Institute for Biobased Materials (AMIBM), The Netherlands.
All aqueous solutions were prepared with deionized water with a resistivity
of 18.1 MΩ cm–1.
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8

Dairy Ingredient Analysis Protocol

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Agar and d‐glucose were purchased from Merck (Merck, Darmstadt, Germany). Skimmed milk powder, whole milk powder, and cream powder were produced by Pegah Fars Company (Shiraz, Iran). Sodium chloride, phenol red, crystal violet, safranin, acetone, M17 Agar, MRS Agar, phenolphthalein, trichloroacetic acid, ethanol 98%, o‐phthaldialdehyde, hydrochloric acid, sulfuric acid, ß‐mercaptoethanol, sodium tetraborate, sodium dodecyl sulfate, and sodium hydroxide were from purchased from Merck.
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9

Quantifying Biofilm Biomass by Safranin Staining

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The biofilm biomass was determined by staining the adherent bacteria on the discs with 0.1% safranin (Merck) for 30 min. The unabsorbed safranin and unattached bacteria were removed by washing in PBS. safranin was released from the biofilm by incubation in acetic acid (30%) for 10 min, and the amount of safranin was quantified by measuring the absorbance at 530 nm in a Cytation™ 3 Cell Imaging Multi-Mode Reader (BioTek, Santa Clara, CA, USA). The experiments were repeated three times.
Discs incubated in sterile modified BHI were used as a positive control, and discs with biofilm (no decontamination) were used as a negative control.
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10

Synthesis of Aniline-based Nanocomposites

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Commercial aniline (AlGomhoria Chemicals Co.; Egypt), 2-aminobenzene-1,4-disulfonic acid (ICI; Manchester, UK), safranin (≥ 85%; Merck, Darmstadt, Germany), ammonium persulfate (Oxford Lab Fine Chemicals, India), and tetraethyl orthosilicate (TEOS) (98%; Sigma‒Aldrich, Steinheim, Germany) were used. Cetyltrimethylammonium ammonium bromide (CTAB 98%, Sigma‒Aldrich, Steinheim, Germany) was used. Silver nitrate (99.9%, HOLPRO ANALYTICS DIVISION, Midrand, INDIA) and sodium borohydride (95%, Fluka, Switzerland) were used. The ethanol and ammonia solutions (30%) used were of analytical grade. All the chemicals were used without further purification [25 (link)]. .
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