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2 4 amidinophenyl 6 indolecarbamidine dihydrochloride 4 6 diamidino 2 phenylindole dihydrochloride dapi

Manufactured by Merck Group

2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride and 4',6-Diamidino-2-phenylindole dihydrochloride (DAPI) are fluorescent dyes used for labeling and visualizing DNA in biological samples. They bind to the minor groove of DNA, emitting fluorescence when excited by ultraviolet or blue light.

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3 protocols using 2 4 amidinophenyl 6 indolecarbamidine dihydrochloride 4 6 diamidino 2 phenylindole dihydrochloride dapi

1

Quantification of VEGFR2 and F-actin in HUVECs

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Trypsinized HUVEC were incubated in suspension, under plate rotation for 30 min at 37°C and 5% CO2, with 3.5 μm diameter magnetic beads conjugated with a biotinylated mouse anti-human VEGF Receptor 2 (from MACSiBeads, Miltenyi, Auburn, CA), at a ratio of beads to cells of 20:1. The cells were then fixed, permeabilized as described, stained with AlexaFluor 488-Phalloidin and further incubated with an anti-mouse-AlexaFluor 543 antibody for detection of the beads, and with 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride, 4’,6-Diamidino-2-phenylindole dihydrochloride (DAPI, Sigma-Aldrich, St. Louis, MO) for visualization of nuclei.
Scaffolds containing live cells were also incubated with PKH26 (Sigma-Aldrich, St. Louis, MO), a hydrophobic red fluorescent label [28 (link)], dissolved either in the solution provided by the manufacturer to label the SFMs, or in phosphate buffer saline (PBS, pH 7.4), to induce its precipitation and to be phagocytosed by the cells.
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2

Spinal Cord Myelination Visualization

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Deeply anesthetized mice were perfused with 30 ml of saline 0.9% (w/v) and then with 50 ml of paraformaldhehyde 4% (w/v in PBS). Spinal cord was collected and soaked into 4% paraformaldehyde for 1 day prior to being transferred into sucrose 30% (w/v) for 2 days and then put into OCT for freezing at −80°C. Nine micron sections were stained for FluoroMyelin™ Green fluorescent myelin stain (Thermofisher Scientific) and 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride, 4′,6-Diamidino-2-phenylindole dihydrochloride (DAPI) (Sigma-Aldrich) for nucleus detection according to manufacturers' instructions. Slides were observed using a SP5 Leica confocal microscope and confocal images acquired sequentially in different channels using LASAF software and overlay using Adobe Photoshop software.
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3

Quantification of VEGFR2 and F-actin in HUVECs

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Trypsinized HUVEC were incubated in suspension, under plate rotation for 30 min at 37°C and 5% CO2, with 3.5 μm diameter magnetic beads conjugated with a biotinylated mouse anti-human VEGF Receptor 2 (from MACSiBeads, Miltenyi, Auburn, CA), at a ratio of beads to cells of 20:1. The cells were then fixed, permeabilized as described, stained with AlexaFluor 488-Phalloidin and further incubated with an anti-mouse-AlexaFluor 543 antibody for detection of the beads, and with 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride, 4’,6-Diamidino-2-phenylindole dihydrochloride (DAPI, Sigma-Aldrich, St. Louis, MO) for visualization of nuclei.
Scaffolds containing live cells were also incubated with PKH26 (Sigma-Aldrich, St. Louis, MO), a hydrophobic red fluorescent label [28 (link)], dissolved either in the solution provided by the manufacturer to label the SFMs, or in phosphate buffer saline (PBS, pH 7.4), to induce its precipitation and to be phagocytosed by the cells.
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