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Gen5 version 2

Manufactured by Agilent Technologies
Sourced in United States

Gen5 version 2.09 software is a data analysis and plate reader control software developed by Agilent Technologies. It provides basic functionalities for configuring and operating Agilent's microplate readers.

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8 protocols using gen5 version 2

1

Measuring HDAC Activity in Cellular Extracts

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Cell lysates were obtained using RIPA buffer. Nuclear proteins were extracted with an EpiQuik Nuclear Extraction kit (EpigenTek, Farmingdale, NY) following the manufacturer’s instructions. Total HDAC activity in cell lysates or nuclear extracts was determined using a HDAC Activity Colorimetric Assay kit (EpigenTek). Absorbance was measured by an EL800 microplate reader controlled by Gen5 version 2.09 software (BioTek Instruments, Inc., Winooski, VT). HDAC activity was expressed as OD/mg of protein.
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2

Amino Acid Analysis of Cord Blood

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Cord blood was obtained at cesarean section. For later samples, the femoral vein was accessed percutaneously through ultrasound guidance. Serum and plasma were separated using standard protocols. For amino acid analysis, blood was dried on 903 Protein Saver Cards (GE Healthcare, Pittsburgh, PA). Amino acid and succinylacetone levels were measured by tandem mass spectrometry, as described.21 (link) Cord blood human albumin was measured in triplicate with an enzyme-linked immunosorbent assay (ELISA) quantification kit (Bethyl Laboratories, Montgomery, TX) as per manufacturer's instructions. Plates were read on an EPOCH 2 plate reader with GEN5 (version 2.09) software (BioTek, Winooski, VT).
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3

Cell Viability Measurement using CCK8

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The Cell Counting Kit-8 assay (CCK8, Dojindo Molecular Technologies, Inc., Rockville, MD) was used to measure cell proliferation following the manufacturer’s protocol. Absorbance at 450 nm was determined by an EL800 microplate reader and Gen5 version 2.09 software (BioTek Instruments, Inc., Winooski, VT).
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4

Quantifying Plasma vWF and ADAMTS-13

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Plasma vWF antigen was measured with a SimpleStep ELISA (Abcam, Cambridge, Massachusetts). Briefly, plasma samples were added to wells coated with an antihuman vWF antibody. Wells were incubated with HRP-conjugated antihuman vWF antibody. Tetramethylbenzidine was added to elicit a colorimetric reaction that was quantified with spectrophotometry by a microplate reader (μQuant). Data were analyzed with Gen5, version 2.05 (Bio-Tek). Plasma ADAMTS-13 values were interpolated from a standard curve.
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5

Evaluating C2C12 Cell Viability under DPHC

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Previous studies have shown that C2C12 cells represent a model to study insulin resistance in diabetes and improvement in muscle function [21 (link), 22 (link)]. C2C12 skeletal muscle cells (American Type Culture Collection) were maintained in DMEM with 10% FBS and antibiotics, at 37°C in a humidified incubator of 5% CO2. When the cells reached 80% confluence, C2C12 cells were differentiated into skeletal myotubes in DMEM-low glucose with 2% horse serum for 5 days. Viability levels of C2C12 cells were determined by the ability of mitochondria to convert MTT to an insoluble formazan product. Cells were maintained in 96-well plates at a density of 3 × 104 cells/well and subsequently subjected to different concentrations of DPHC (0.1, 2, 10, and 30 μM) for 24 h. Cells were pretreated with MTT solution (2 mg/mL) for 3 h. Subsequently, cell density was determined by measuring optical density (OD) at 540 nm using a microplate reader (Gen5 version 2.05, BioTek, Winooski, Vermont, USA).
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6

Quantifying Muscle ATP Levels

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Using 0.1 mM ATP standard dilution, a standard curve was generated following the ATP assay kit protocol (ab83355, Abcam, America). 10 mg of muscle tissue was harvested for each assay and washed in cold PBS. Tissue was homogenized in ice-cold 2 N PCA with 10-15 passes. Following maintaining on ice for 30-45 min, samples were centrifuged at 13,000 g for 3 min at 4°C, and supernatants were collected. Samples were adjusted to pH between 6.5 and 8 to neutralize the samples and precipitate the excess PCA. Samples were centrifuged at 13,000 g for 15 min at 4°C, and supernatants were collected. The supernatants were transferred to individual wells of 96-well plates mixed with the same volume of ATP reaction mix and incubated at 21 ± 1°C for 30 min, protected from light. ATP levels in each sample were determined by measuring optical density (OD) at 570 nm using a microplate reader (Gen5 version 2.05, BioTek, Winooski, Vermont, USA). The amount of ATP in the samples was calculated according to the standard curve.
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7

Intracellular ROS Quantification Assay

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Intracellular ROS were quantified by the 2′,7′-dichlorodihydrofluorescein diacetate (H2DCF-DA Cat. No. D6883; Sigma). C2C12 cells were plated (2000 cells/well) into special optics 96-well plates (Corning-Costar, New York, NY, USA) and the cells were treated with RSV at 1 µM and Compound 6 at 1 and 10 µM for 24 h. After the incubation, cells were washed with an imaging buffer and treated with 300 µM H2O2 for an immediate fluorescence measurement. Plates were read every 50 s from 0 to 10 min for kinetic data analysis using a microplate reader (Synergy H1, BioTek), with excitation and emission wavelengths at 490 nm and 520 nm, respectively, and analyzed by Gen 5 version 2.08 (BioTek) [56 (link)].
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8

Oxidative Stress Measurement in Differentiated Neuroblastoma Cells

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SHSY-5Y human neuroblastoma cells were plated (2700 cells/well) into special optics 96-well plates (Corning-Costar, New York, USA) and the cells were treated with retinoic acid (RA)/phorbol 12-myristate 13-acetate (PMA) in order to obtain a dopaminergic phenotype. The differentiated cells were treated with SP1–6 at 1 µM for 24 h and then washed with an imaging buffer (125 mM NaCl, 5 mM KCl, 1.2 mM MgSO4, 5 mM glucose, 25 mM HEPES, and 2 mM CaCl2). A concentration of 10 µM of 2′,7′-dichlorofluorescin diacetate (H2DCFDA, Molecular probes, Life Technologies REF D399) was added and the plates were incubated at 37 °C for 30 min. After the incubation, cells were washed with an imaging buffer and treated with 25 µM H2O2 for an immediate fluorescence measurement.
Plates were read every 50 s from 0 to 5 min for kinetic data analysis using a microplate reader (Synergy H1, BioTek), with excitation and emission wavelengths at 490 nm and 520 nm, respectively, and analyzed by Gen 5 version 2.08 (BioTek).
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