Representative counting frames were obtained using a standard optical microscope equipped with the 40 × objective (Nikon Instruments Europe B.V., Amstelveen, The Netherlands) and coupled to the
NIS-Elements Imaging Software 3.00 (Nikon). The brain regions of interest for this study were the following: PrL, Str, BLA, and the hippocampal areas CA1 and CA3 and the dentate gyrus. A minimum of eight coronal sections per brain region were analyzed, which resulted in one of every six equidistant sections (one representative section for each 180 µm) according to the rostro-caudal extent. Estimations of the number of IBA-1-immunoreactive ( +) cells per area (mm
2) in both hemispheres were manually counted according to stereological methods and calculated based on the following formula (Rivera et al., 2018 (
link)):
where ΣQ − is the total number of positive ( +) cells counted per animal, and
astr is the area (mm
2) of the structure analyzed. Cell number quantification was expressed as the average number of IBA-1 + cells per area (mm
2) for each experimental group. For densitometric analysis, quantification of IBA1 immunoreactivity is determined using ImageJ software (NIH, USA) and expressed as arbitrary units of average intensity of the image field that corresponds to representative areas of the brain regions.
Aranda J., Fernández-Arjona M.D., Alén F., Rivera P., Rubio L., Smith-Fernández I., Pavón F.J., Serrano A., Serrano-Castro P.J., Rodríguez de Fonseca F, & Suárez J. (2021). Sudden cessation of fluoxetine before alcohol drinking reinstatement alters microglial morphology and TLR4/inflammatory neuroadaptation in the rat brain. Brain Structure & Function, 226(7), 2243-2264.