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4 protocols using beclin 1

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Mitochondrial Dynamics and Oxidative Stress

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FAC, calcein acetoxymethyl ester (CA-AM), deferiprone (L1) and 2',7'-dichlorofluorescin diacetate (DCFH-DA) were purchased from Sigma-Aldrich (USA). DFO was from Novartis Pharma (Switzerland). NAC, Catalase, Beclin-1, ATG5 and ATG7 were from Beyotime Biotechnology (Shanghai, China). AICAR was from Med Chem Express (USA). AMPK, p-AMPK (Thr172), p-Drp1 (Ser616), p-Drp1 (Ser637), p-ACC (ser79), LC3, GAPDH and VDAC1 were from Cell Signalling Biotechnology (Danvers, MA, USA). MFF was from Abcam (Cambridge, MA, USA). p-MFF (ser155) was generated by YenZym Antibodies (South San Francisco, CA, USA). TOM20 and Drp1 were from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Alexa Fluor 594-conjugated goat anti-rabbit IgG (H + L) secondary antibody, Alexa Fluor 488-conjugated goat anti-mouse IgG (H + L) secondary antibody and MitSOXTM Red Mitochondrial Superoxide Indicator were from Thermo Scientific (Rockford, IL, USA).
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SARS-CoV-2 Protein Localization and Interaction

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The Nsp1–10 and Nsp12–16 fragments were obtained from the SARS-CoV-2 (MN908947.3) cDNA provided by Prof. Ke Peng (Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China) (Li et al., 2020 (link)). The Nsp1–10, Nsp12–16, and N- and C-terminal domains of Nsp8 fragments were cloned into pCMV-Flag vector. And the full-lenth, N- and C-terminal domains of Nsp8 were cloned into pCMV-GFP vector to generate pCMV-GFP-Nsp8, pCMV-GFP-Nsp8-N and pCMV-GFP-Nsp8-C plasmids. Flag-Nsp8 was cloned into pCDH-puro-EGFP to generate the pCDH-Nsp8-puro-EGFP plasmid. Supplementary Table S1 lists the primers used in plasmid construction. Mito-DsRed2-EGFP (Cat#P4954) and mCherry-EGFP-LC3 (Cat#P0446) plasmids were purchased from Miaoling Plasmid Sharing Platform (Wuhan, China). EGFP-LC3 was cloned by mutation of mCherry-EGFP-LC3. The following primary antibodies were used: TOM20 (Beyotime, AF1717); SQSTM1/p62 (Beyotime, AF5312); Beclin 1 (Beyotime, AF5123); ATG5 (Beyotime, AF2269); LC3A/B (Cell Signaling Technology, 12741S); anti-Mouse IgG 647 (Invitrogen, A31571); anti-Mouse IgG594 (Invitrogen, A21203); Flag (Proteintech, 20543-1-AP); β-Actin (Proteintech, 66009-1-Ig); Cytochrome c (Proteintech, 10993-1-AP); COXII (Proteintech, 55070-1-AP); TIM23 (Proteintech, 11123-1-AP); SARS-CoV-2-NP (Sino Biological, 40143-MM05).
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Western Blot Analysis of Apoptosis-Related Proteins

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Total proteins were loaded by 10% SDS-PAGE, transferred to polyvinylidene difluoride membranes, and blocked with 5% skim milk. Membranes were incubated with the following primary antibodies at 4°C overnight: GPX-4 (#bs-3884R; Bioss, China), B-cell lymphoma 2 (Bcl-2; # T40056; Abmart, China), Bcl-2-associated X protein (Bax; #T40051; Abmart, China), cleaved caspase-3 (#9644T; Cell signaling technology, USA), DNA damage-inducible transcript 3 protein/enhancer-binding protein homologous protein (DDIT3/CHOP; #AF6684; Beyotime Biotechnology, China), Beclin 1 (#AF5123; Beyotime Biotechnology, China), SQSTM1/p62 (#AF5312; Beyotime Biotechnology, China), ATG5 (#T55766; Abmart, China), and LC3B (#T55992; Abmart, China). A digital gel image analysis system Amersham Imager 600 (GE Healthcare Bio-Sciences, USA) was used to measure and analyze the density of the bands.
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Western Blot Analysis of Autophagy and Apoptosis Markers

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Total protein from CIHP-1 cells was extracted by RIPA (Beyotime), and denatured at 98 °C for 7 min before separation, and then transferred to polyvinylidene difluoride (PVDF, Beyotime) membranes. Membranes were sealed with 5% milk for 2 h before incubation with primary antibodies against B-cell lymphoma-2 (BCL-2, 1:1000, Abcam, Cambridge, MA, USA), Cleaved-caspase-3 (1:500, Abcam), Light chain 3-II (LC3-II, 1:3000, Abcam), LC3-I (1:1000, Abcam), Beclin 1 (1:2000, Beyotime), PPARγ (1:500, Abcam) or GAPDH (1:2000, Beyotime) overnight at 4 °C. HRP-conjugated secondary antibody (1:4000, Abcam) was employed to incubate the membranes for another 1 h. And the proteins were visualized by using BeyoECL Moon (Beyotime).
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