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60 protocols using histopaque gradient

1

Isolation and Enrichment of NK Cells

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To isolate the PBMCs, a histopaque gradient (Sigma-Aldrich, St. Louis, MO) and SepMate tubes (Stemcell Technologies, Vancouver, Canada) were used. Adult blood was derived from healthy volunteers (Memorial Blood Center, Minneapolis, MN). To enrich the NK cells, magnetic beads (Stemcell Technologies) were used according to the manufacturer´s protocol by performing a negative selection. The purity was determined by flow cytometry. The samples were obtained after informed consent and in accordance with the University of Minnesota human subjects Institutional Review Board and the Declaration of Helsinki.
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2

Insulin Release from Mouse Islets

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Islets were obtained from mice, isolated through collagenase perfusion and Histopaque gradient (Sigma) and cultured, as described previously [10,35] . Eight islets were pre-incubated in HEPES-buffered Krebs–Ringer bicarbonate medium without glucose for 30 min and then replaced for 1 h in the same medium supplemented with 5.5 or 16.7 mM glucose at 37 °C with 5% CO2. At the end of the experiment, the supernatant was recovered to measure the insulin released, and islets were extracted with acid-ethanol solution to measure insulin content.
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3

Isolation of Pancreatic Islets from Mice

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Pancreatic islets were isolated from mice as previously described (24 (link), 47 (link)). Briefly, mice were sacrificed by cervical dislocation and immediately processed for pancreatic perfusion. The pancreas was distended via the intraductal injection of Liberase (Roche, 5401020001) and incubated at 37°C for digestion. The digested suspension was passed through a nylon mesh and islets were isolated by density gradient centrifugation on a Histopaque gradient (1.077 g/mL density; Sigma-Aldrich) for 20 minutes at 900g without brake. Islets were then collected from the interface, washed, and hand-picked under a dissecting microscope. Isolated islets were recovered overnight in RPMI 1640 medium in a humidified incubator (95% air, 5% CO2) at 37°C.
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4

Isolation of Mononuclear Cells for Bioreactor

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Mononuclear cells were isolated using density gradient centrifugation through a Histopaque gradient (Sigma-Aldrich, Brøndby, Denmark). The total amounts of isolated cells from each sheep were resuspended in 22 mL of fresh α-MEM+ before injection into a perfusion bioreactor (Millenium Biologix AG, Zurich, Switzerland).
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5

Detailed Islet Isolation and Glucose-Stimulated Insulin Secretion

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For islet isolation, the pancreas was injected with Liberase TM (Roche), digested at 37°C, and islets purified using a Histopaque gradient (Sigma-Aldrich), and handpicked as previously described (48 (link)). For secretion studies, isolated islets were cultured overnight in RPMI supplemented with 10% FBS. Following a 30-minute preincubation in Krebs-HEPES-bicarbonate buffer (KHB; 140 mM NaCl, 3.6 mM KCl, 0.5 mM NaH2PO4, 0.2 mM MgSO4, 1.5 mM CaCl2, 10 mM HEPES, 25 mM NaHCO3) with 3 mM glucose, GSIS was assessed by static incubation of 6 size-matched islets in KHB with 3 mM or 16.7 mM glucose for 30 minutes at 37°C. Mature insulin secreted into the media and total mature insulin content of the islets were assayed by ELISA (Crystal Chem; no cross-reactivity with proinsulins).
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6

Isolation and Culture of Immune Cells

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Blood was collected with informed consent in the Saint Louis University Rheumatology clinic. P116 cells (ATCC, CRL-2676), an acute T-cell leukemia ZAP-70 mutant line was grown as per guideline from ATCC. Jurkat, HEK 293T, THP1 and Raji were also obtained from ATCC. The peripheral blood mononuclear cells (PBMCs) were isolated using Histopaque gradient (Sigma).
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7

Investigating MIF's Influence on Inflammatory Gene Expression in PBMCs

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To check the effect of MIF on the expression status of certain inflammation-associated genes in PBMCs, cells were isolated from hamster blood using the Histopaque gradient as suggested by the manufacturer (Sigma, USA). The isolated PBMCs were cultured in 10% RPMI media and treated with BSA (100 ng/ml), MaMIF (100 ng/ml)36 (link)–38 (link), Polymyxin B (30 μg/ml), MaMIF + Polymyxin B, ISO-1 ((S, R)-3-(4-hydroxyphenyl)-4, 5-dihydro-5-isoxazole acetic acid methyl ester) (100 μg/ml) or MaMIF + ISO-1 for 4 hours. Then cells were harvested in RLT buffer and processed for RNA isolation as described by the manufacturer (Qiagen, USA). RNA quantification was carried out using Nanodrop followed by cDNA synthesis11 (link). The expression levels of Tnf-α Il-6, Il-1β and Vegf, and were analyzed in all the cDNA samples through qPCR, by using gene-specific primers. Polymyxin B was used to neutralize any residual LPS present along with MaMIF protein.
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8

Isolating Bone Marrow and Peripheral Blood Cells

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All procedures in this study were approved by the Human Research Protection Office at Washington University. Bone marrow was obtained from total hip arthroplasty samples from patients undergoing elective surgery (Barnes Jewish Hospital). For bone marrow aspirates, 20–30 ml Iscove's Modified Dulbecco's Medium was added, samples were dissociated using vigorous agitation, and filtered through 70µM nylon mesh. Red blood cells were removed using ACK lysis buffer, samples were stained with 1µl/107 cells α-CD138 microbeads (Miltenyi Biotec), and enriched on an AutoMacs machine (Miltenyi Biotec) over two columns. Peripheral blood was obtained from the Barnes Jewish Hospital Pheresis center from waste Trima fillers. Samples were spun through a 1.077g/ml Histopaque gradient (Sigma), interface cells were collected, lysed with ACK, and stained for FACS as in Supplemental Fig. 1.
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9

Isolation of Mouse Pancreatic Islets

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Mouse islets were prepared as in Ravier and Rutter (2005) (link). Briefly, pancreata were perfused via the pancreatic duct with a NB8 collagenase solution (SERVA, Uetersen, Germany). Pancreata were digested at 37°C for 10 min and separated using a histopaque gradient (Sigma-Aldrich). Islets were handpicked under a microscope and cultured overnight in RPMI 1640 containing 11.1 mM glucose.
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10

Isolation and Purification of Human NK-Cells

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Peripheral blood mononuclear cells (PBMC) were isolated from adult blood (Memorial Blood Center, Minneapolis, MN) by centrifugation, using a Histopaque gradient (Sigma-Aldrich, St. Louis, MO), and NK-cells were purified by removing T-cells, B-cells, stem cells, dendritic cells, monocytes, granulocytes and erythroid cells via magnetic beads per the manufacturer's protocol (Miltenyi Biotec, Auburn, CA). Samples were obtained after informed consent and in accordance with the University of Minnesota human subjects Institutional Review Board and the Declaration of Helsinki.
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