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Takara sybr premix ex taq

Manufactured by Takara Bio
Sourced in Japan, United States, China

Takara SYBR Premix Ex Taq is a real-time PCR master mix designed for sensitive and reliable gene expression analysis. It contains SYBR Green I dye, hot-start Taq DNA polymerase, and optimized buffer components for accurate quantification of target sequences.

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26 protocols using takara sybr premix ex taq

1

RT-qPCR Analysis of Murine GM-CSF and β-ACTIN

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The RT-qPCR analysis was performed using TAKARA SYBR Premix EXTaqTM (TAKARA BIOTECHNOLOGY, Dalian, China). The reaction mixtures containing SYBR Green were composed following the manufacturer’s protocol. The primer sequences used were as follows.
Murine GM-CSF5ʹ-AAGATATTCGAGCAGGGTCTACGG-3ʹ
5ʹ-CGCATAGGTGGTAACTTGTGTTTCA-3ʹ
Murine β-ACTIN5ʹ-GGTCATCACTATTGGCAACG-3ʹ
5ʹ-ACGGATGTCAACGTCACACT-3ʹ
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2

Quantifying HSF1 expression in AC16 cells

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Total RNA was extracted from AC16 cell lines using TRIzol (Sangon Biotech China), and 300–500 ng of total RNA was reversed to cDNA using PrimeScriptTM II 1st Strand cDNA Synthesis Kit (TaKaRa Japan). qRT-PCR was performed by Takara SYBR Premix Ex TaqTM (TaKaRa Japan) on CFX96 Touch (Bio-Rad U.S.A.). The fold change of relative mRNA expression was calculated using the 2-ΔΔCt method with GAPDH serving as internal control. Sequences for qRT-PCR primers are shown as follows: human GAPDH forward:5′-GGAGCGAGATCCCTCCAAAAT-3′, reverse:5′-GGCTGTTGTCATA.
CTTCTCATGG-3’; human HSF1 forward 5′ GCCAAGGAGGTGCTGCCCAAG TAC-3′, reverse 5′-GGCCGCCCTGCTCGATGTG-3’.
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3

Quantifying miRNA and mRNA Expression

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Total RNA extraction from muscles and cells was performed by RNeasy Mini Kit (Qiagen), according to the manufacturer's instructions. The Bulge-Loop miRNA qPCR Primer Set (RiboBio) was used to determine the expression levels of miRNAs by qRT–PCRs with Takara SYBR Premix Ex Taq (TliRNaseH Plus) in a BioRad CFX96 Real-Time PCR Detection System. 5S was used as an internal control. For mRNA analysis, cDNA was synthesized using Takara PrimeScript 1st Strand cDNA Synthesis Kit and was subjected to quantitative PCR with Takara SYBR Premix Ex TaqTM. 18S was used as an internal control. The primer sequences used in this study were listed in Supplementary Table 3. The relative expression level of gene or miRNA was calculated using the 2−ΔΔCt method.
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4

Quantitative RT-PCR Analysis of Arg1, Ym1, and Actin

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The quantitative real-time RT-PCR analysis was performed by using TAKARA SYBR Premix EXTaqTM (TAKARA BIOTECHNOLOGY, Dalian, People’s Republic of China). The reaction mixtures containing SYBR Green were composed following the manufacturer’s protocol. The sequences of the primers used were as follows: ARG1: 5′-CACTCCCCTGACAACCAGCT-3′ and 5′-AGGACACAGGTTGCCCATG-3′; YM1: 5′-TCTCTACTCCTCAGAACCGTCAGA-3′ and 5′-GATGTTTGTCCTTAGGAGGGCTTC-3′; ACTIN: 5′-GGTCATCACTATTGGCAACG-3′ and 5′-ACGGATGTCAACGTCACACT-3′.
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5

Gene Expression Analysis in F. asiaticum

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In order to study the expression of target genes in F. asiaticum, 200-μL aliquots of conidial suspensions (106/mL) of test strains were inoculated on solid CM with cellophane overlays. After incubation at 23°C for 12 h, the samples were treated with either light or stress agents for 1 h. Subsequently, the mycelium samples were harvested followed by immediate freezing in liquid nitrogen. The frozen mycelium samples were subjected to RNA extraction by using Qiagen reagent (Germany). One microgram of each RNA sample was used for reverse transcription with the reverse transcription (RT) reagent kit (Perfect Real Time) (TaKaRa Biotechnology Co., Dalian, China) according to the manufacturer’s instructions. The resulting single-stranded cDNA was later used as a template for quantitative reverse transcription-PCR (qRT-PCR) in a CFX96TM real-time system (Bio-Rad, Inc., USA) using TaKaRa SYBR Premix Ex Taq (TaKaRa Biotechnology, Co., Dalian, China). Transcript levels of the target genes were normalized against tubulin gene expression. The experiment was repeated three times with triplicate samples. The gene expression levels were calculated using the 2−ΔΔCT method. All primers used in the present study are listed in Table S1.
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6

Gastric Cancer Tissue Gene Expression

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A total of 15 human gastric cancer tissues and paired adjacent non-tumor tissues (more than 2.5 cm from the edge of the cancer tissue), were surgically resected and first diagnosed for primary gastric cancer in the Foshan First People’s Hospital between January 2018 and December 2020. Patients who did not receive preoperative chemoradiation treatment were selected for this study. Ethical approval was obtained from the subject review committee of Foshan First People’s Hospital, and all 15 patients informed consent and signed the consent form. Gastric cancer tissues and adjacent tissues were immediately stored in liquid nitrogen after resection for further RNA extraction. Total tissue RNA was isolated using Trizol reagent (15596-026; Invitrogen; Thermo Fisher Scientific, Inc.), followed by cDNA synthesis using Prime-Script RT Master Mix (TaKaRa, Shiga, Japan) for reverse transcription and TaKaRa SYBR® Premix Ex Taq™ (TaKaRa) for qRT-PCR. All primers used in the PCR are listed in Table 1. The expression levels of the four risk lncRNAs were normalized to the expression levels of GADPH.
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7

Quantitative Reverse Transcription PCR Analysis

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Quantitative reverse-transcription PCR (RT-qPCR) was carried out to examine the relative abundance of target RNA. 0.1 μg RNA were used for cDNA synthesis using RevertAidTM First Strand cDNA Synthesis Kit (Thermo). Experiments were performed with Takara SYBR Premix Ex Taq (Takara) according to the manufacturer’s instructions and examined by a CFX96 Real-Time PCR System (Bio-Rad). *P < 0.05; **P < 0.01; ***P < 0.001. The primers used for RT-qPCR in this study are listed in Additional file 10.
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8

RNA Extraction and RT-qPCR Analysis of Mouse Tissues

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Total RNA was extracted from mouse heart tissues or NRCMs with a Trizol RNAiso Plus kit (9109; TaKaRa, Kusatsu, Japan). After cDNA synthesis using RevertAid First Strand cDNA Synthesis Kit (K1622; ThermoFisher), RT-qPCRs were conducted using TaKaRa SYBR Premix Ex Taq (RR420A; TaKaRa) on Roche LightCycler480 PCR System (Roche Diagnostics, Rotkreuz, Switzerland). The primers (forward and reverse, 5ʹ–3ʹ) used for RT-qPCR analyses are listed in Supplementary Table 1.
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9

Adipogenesis Regulation through Wnt4 Signaling

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Cell culture reagents, 5-bromo-2'-deoxyuridine (BrdU), anti-BrdU antibody, DNase I and TRIzol, were purchased from Life Technologies (Carlsbad, CA, USA). GLP-1, Exendin9-39 (Ex9), isobutylmethylxanthine (IBMX), dexamethasone (Dex), 4',6-diamidino-2-phenylindole (DAPI), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and Oil Red O were acquired from Sigma Chemical (St. Louis, MO, USA). Complete Protease Inhibitor Cocktail was purchased from Roche Applied Science (Mannheim, Germany). TaKaRa PrimeScriptTM RT reagents kits and TaKaRa SYBR premix Ex Taq were acquired from TaKaRa Bio (Kyoto, Japan). Antibodies for β-catenin, (Ser37/Thr41) non-phospho-β-catenin and FITC-conjugated anti-rabbit and anti-mouse IgG antibodies were purchased from Cell Signaling Transduction (Boston, MA, USA). Antibodies for Wnt4 and GAPDH were acquired from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Lifectamine2000 and siRNA control were purchased from Life Technologies (Grand Island, New York, USA). All other chemicals of analytical grade were acquired from Dingguo Bio (Shanghai, China).
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10

Profiling miRNA and mRNA Expression

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Total RNA was isolated from muscle or cells using RNeasy Mini Kit (QIAGEN) according to the manufacturer’s protocol. The Bulge-Loop miRNA qPCR Primer Set (RiboBio) was used to determine the expression levels of miRNAs by quantitative real-time PCR with Takara SYBR Premix Ex Taq (TliRNaseH Plus) in a Roche Real-Time PCR Detection System. 5S was used as an internal control. For mRNA analysis, cDNA was synthesized using Takara PrimeScript 1st Strand cDNA Synthesis Kit and was subjected to qPCR with Takara SYBR Premix Ex Taq. To correct for potential variances between samples regarding differences in mRNA extraction and reverse transcription efficiency, gene expression was normalized to the expression of the reference gene 18S. The primer sequences were as we previously described.18 (link)
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