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Coy anaerobic chamber

Manufactured by Coy Laboratory Products
Sourced in United States

The Coy anaerobic chamber is a laboratory equipment designed to maintain an oxygen-free environment for scientific research and experimentation. The chamber provides a controlled atmosphere with precise control over oxygen levels, temperature, and other environmental conditions.

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22 protocols using coy anaerobic chamber

1

Anaerobic Purification of FtmOx1 Protein

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In a typical anaerobic
purification of FtmOx1, ∼30 g wet cell paste was resuspended
in 50 mL of anaerobic buffer (100 mM Tris–HCl, 50 mM NaCl,
pH 7.5) in an anaerobic Coy chamber (Coy Laboratory Products, Inc.,
Grass Lake, USA). Lysozyme (5 mg/mL final concentration), EDTA (5
mM final concentration), and ascorbate (5 mM final concentration)
were then added into the cell suspension, and the mixture was incubated
on ice with gentle stirring for 30 min. The cells were disrupted by
sonication (40 cycles of 3 s bursts) using a VCX130 ultrasonic processor
(SONICS & MATERIALS, Inc., Newtown, USA). The supernatant and
the cell debris were anaerobically separated by centrifugation at
4 °C for 60 min at 12,000 rpm. The resulting supernatant was
mixed with 30 mL of Strep-Tactin resin (IBA Lifesciences GmbH, Göttingen,
Germany) and incubated on ice for 30 min. Then, the column was washed
with washing buffer (100 mM Tris–HCl and 50 mM NaCl, pH 7.5)
until the OD260 readout of the eluate was less than 0.05.
The FtmOx1 protein was eluted with elution buffer (2.5 mM desthiobiotin
in 100 mM Tris–HCl and 50 mM NaCl, pH 7.5). The eluted protein
was concentrated to be ∼12 mg/mL, flash-frozen with liquid
nitrogen, and stored at −80 °C. From 31 g of wet cell
paste, ∼300 mg of protein was obtained.
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2

Biomineralized Magnetic Nanoparticle Synthesis

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MamC was produced as a recombinant protein following the protocol in Valverde-Tercedor et al.9 (link) The protein was expressed in cultures of Escherichia coli TOP10 growing at 37 °C (Life Technologies, Invitrogen, Grand Island, NY, USA) and induced with isopropyl-β-d-thiogalactopyranoside (IPTG, Fisher BioReagents, Pittsburgh, PA, USA). Guanidinium lysis buffer was used to lysate the cell pellet and, after centrifugation, the supernatant was loaded onto a HiTrap chelating HP column (GE Healthcare, Chicago, IL, USA) and purified under denaturant conditions. MamC was allowed to refold by successive dialyzes. All buffers were procured from Sigma Aldrich, St. Louis, MO, USA.
BMNPs were synthetized inside an anaerobic COY chamber (Coy Laboratory Products, Grass Lake, MI) from the following master solution 2.78 mM Fe(ClO4)2, 3.5 mM NaHCO3, 3.5 mM Na2CO3, and 5.56 mM FeCl3, at pH 9, 10 μg/mL MamC were added. The formation of the nanoparticles occurred in free-drift experiments for 30 days at 25°C and 1 atm total pressure. The precipitates were magnetically concentrated and rinsed with oxygen-free MilliQ water four times. BMNPs were concentrated to 25 mg/mL in HEPES for synthesis 1 and in PBS for synthesis 2 (detailed below).
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3

Aerobic characterization of MF05 mutant

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MF05 was previously aerobically characterized by Figueroa et al. 2018 [25 (link)] and E. coli BW25113 was used as a wild-type control bacterium. Cells were grown routinely at 37°C in either LB, M9 minimum, or modified M9 minimum (M9*) medium containing 1 mM Na2SO3 and 1 mM MgCl2 (instead of MgSO4). Growth in liquid medium was generally started with a 1% dilution of overnight grown cultures. For experiments under anaerobic conditions, a Coy anaerobic chamber (Coy Laboratory Products, Inc. Grass Lake, MI, USA) with a 100% N2 internal atmosphere was used.
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4

Anaerobic Enzyme Activity Assay

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S. oneidensis wild type and mutant strains were grown anaerobically in basal medium supplemented with 50 mM lactate, 0.02% casamino acids and 10 mM sodium sulfite or 0.5 mM potassium nitrite as electron acceptors. Cell extracts were prepared using B-PER lysis reagent (PIERCE, Rockford, IL). Protein concentrations were determined using the Coomassie Plus Protein Assay kit and 50 μg total protein was separated on 10% native polyacrylamide gels. Enzyme activities were assayed essentially as previously described41 (link). Gels were transferred to a Coy anaerobic chamber (Coy Laboratory Products, Grass Lake, MI) and stained for 20 min with reduced methyl viologen [38.9 mM methyl viologen dichloride and 57.4 mM sodium hydrosulfite in 10 mM Tris pH 7]. 10 mM of Na2SO3 or KNO3 was added and the gels were incubated further until bands of clearing, indicating reduction of the electron acceptors, were observed. Gels were imaged using a Kodak DC290 digital imaging system (Eastman Kodak, Rochester, NY).
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5

Heme-Nitric Oxide Sensor Activation

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Purified H-NOX was incubated with 20 mM potassium ferricyanide at room temperature for 20 min to generate oxidized Fe(III)-heme. The protein was desalted using a PD-10 column equilibrated in 50 mM HEPES (pH 7.5) and 200 mM NaCl to remove excess potassium ferricyanide. The Fe(III)-H-NOX was exposed to an anaerobic environment using a COY Anaerobic Chamber (Coy Laboratory Products) to deoxygenate the protein. Oxygen-free Fe(III)-H-NOX was treated with 60 mM sodium dithionite (Na2S2O4) at room temperature for 20 min to generate Fe(II) bound heme protein. The protein was again desalted as previously described, but under anaerobic conditions. NO-bound Fe(II)-H-NOX was formed by incubating the protein with the NO donor diethylammonium (Z)-1-(N,N-diethylamino)diazen-1-ium-1,2-diolate (DEA-NONOate, Cayman Chemicals) dissolved in 10 mM sodium hydroxide and followed by desalting. Carbon monoxide(CO)-bound Fe(II)-H-NOX was generated by bubbling CO gas into the protein for 15 min in an airtight vial. Electronic absorption spectra of all complexes were measured on a Cary 100 UV-Vis spectrophotometer equipped with a constant temperature bath set to 25°C.
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6

Culturing Clostridioides difficile Strains

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Materials and chemicals were purchased from Fisher Scientific (Hampton, NH, USA) unless otherwise indicated. The bacterial strains used in this study are listed in Table S1. C. difficile 630Δerm and R20291 were maintained on brain-heart infusion supplemented with 5% yeast extract (BHIS) agar plates and liquid cultures were grown in TY medium [16 (link),75 (link),76 (link)]. All anaerobic bacterial culture took place at 37 °C in a Coy anaerobic chamber (Coy Laboratory Products, Grass Lake, MI) with an atmosphere of 85% N2, 10% CO2, 5% H2. All plastic consumables were allowed to equilibrate in the anaerobic chamber for a minimum of 72 h.
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7

Anaerobic Cellobiose Metabolism Kinetics

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Cells were grown at 55 C in a COY anaerobic chamber (Coy Laboratory Products, Grass Lake, MI). Serial transfers were performed in either rich medium (lineage group A) or chemically defined medium (lineage groups B and C) in medium with 50 g/L cellobiose, using different transfer strategies described in Table 1. Transfers were approximately 1% by volume (100 μl into 10 ml), which allows for approximately 6.6 generations per transfer. The effective population size was approximately 1e8 (0.1 ml of an OD600 = 1 culture with 1e9 cells/ml/OD).
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8

Antimicrobial Activity Evaluation of Microbes

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The antimicrobial activity of agents was tested against standard strains of microorganisms. Specimens of Streptococcus mutans (ATCC 10449 serotype c), Lactobacillus acidophilus (ATCC 4356), and Enterococci faecalis (V583) were used. The stock cultures were stored in skim milk at -80°C. Inoculum from those stock cultures were cultivated in Wilkins-Chalgren Anaerobe broth (Oxoid Ltd., Basingstoke, Hampshire, UK) in an atmosphere of 5% CO 2 /10% H 2 /85% N 2 (Coy anaerobic chamber, Coy Laboratory Products Inc., Ann Arbor, MI, USA) after being screened by Gram-staining to confirm purity. The bacteria were also cultivated on sheep blood agar plates for the analysis of colony morphology and confirmation of purity. Loopful inoculations of S. mutans, L. acidophilus, and E. faecalis were transferred to 10 mL of appropriate broth and incubated at 37°C under anaerobic conditions. Each microbial strain suspension was adjusted to the turbidity level, corresponding to tube #1 of the McFarland scale, for an approximate concentration of 3 x 10 8 cells per mL.
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9

Cultivation and DNA Extraction of D. nodosus

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All isolates except those from Sweden were grown at Monash University in a Coy anaerobic chamber (Coy Laboratory Products Inc.) in an atmosphere of 10% (vol/vol) H2, 10% (vol/vol) CO2, and 80% (vol/vol) N2 on Eugon (BBL) yeast extract (EYE) agar with 5% (vol/vol) defibrinated horse blood (Bio-Lab) or in EYE broth, as described previously (43 (link)). D. nodosus genomic DNA was prepared by using a Qiagen DNeasy kit according to the manufacturer’s instructions. The Swedish isolates were grown on fastidious anaerobe agar plates (Lab M Ltd.) with 5% defibrinated horse blood (Håtunalab AB). The plates were incubated anaerobically at 37°C for 4 days. DNA extraction was performed with a BioRobot EZ1 system (Qiagen) according to the manufacturer’s instructions using the EZ1 tissue kit and the bacterial protocol from the same manufacturer.
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10

Fecal Microbiome Inoculum Preparation

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Fresh feces were obtained from 14 healthy infants (aged between 5 and 12 months) with informed consent from their primary care givers. Approval #16/NTA/154, dated 7 October 2016, was obtained from the Health and Disability Ethics Committees, Ministry of Health, New Zealand. Relevant details of the infant donors who donated feces as a source of gut microbiota are provided as a supplementary table (Table S1).
The nappy liners containing fresh feces were transferred to gastight bags containing one Anaeropouch™ (Mitsubishi Gas Chemical Company Inc., Tokyo, Japan) and transported in an insulated lunch bag containing an icepack to the laboratory. The feces were processed within 1 h of defecation into a 25% v/v fecal slurry by homogenizing with chilled sterile pre-reduced glycerol in phosphate-buffered saline with 0.05% w/v cysteine, and aliquots were stored at −80 °C. All processing of feces was carried out anaerobically under an atmosphere of CO2:H2:N2 at 5:5:90 in a Coy anaerobic chamber (Coy Laboratory Products Inc., Grass Lake, MI, USA). Two hours before the fermentation, one aliquot of each of 14 fecal slurries was removed from −80 °C, thawed in the anaerobic chamber, and pooled in equal proportions for immediate use as the inoculum.
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