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9 protocols using horseradish peroxidase labeled goat anti rabbit igg

1

Immunodetection of Amyloid Fibrils and Oligomers

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Aliquots containing 100 ng Ca2+-bound monomers and amyloids of Gad m 1 chains were spotted in duplicate on a nitrocellulose membrane. Immunodetection was performed by 1 h of incubation with anti-amyloid fibril OC (AB2286 Merck Millipore, 1/2000 dilution) and anti-amyloid oligomer A11 (AB9234 Merck Millipore, 1/2000 dilution) antibodies, followed by extensive washes and 30 min of incubation with horseradish peroxidase-labeled goat anti-rabbit IgG (1:5000 diluted; Sigma-Aldrich) [25 (link),26 (link)]. ECL Western blotting reagent (BioRad) and a ChemiDoc XRS instrument (BioRad) were used for signal development and detection, respectively.
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2

ELISA for Man4-Antibody Characterization

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Enzyme-linked immunosorbent assay (ELISA) for the characterization of the Man4-antibody was carried out as follows. A 96-well flat bottom microtiter plate was coated with Man4-BSA (2 µg/100 µl/well) in 0.1 M carbonate buffer (pH 9.6) overnight at 4°C. After blocking with 1% ovalbumin (OVA) in the same buffer, the wells were washed 3 times with PBS-0.1% tween 20. A 50 µl aliquot of the serially diluted Man4-antibody (PBS/0.1% OVA/0.1% tween 20) was added to each well and incubated at 37°C for 2 h. After the wells were washed thoroughly with PBS-0.1% tween 20, the antibody reacted with the Man4-BSA was detected with the use of horse radish peroxidase-labeled goat anti-rabbit IgG (1/2,500 dilution, Sigma Chemical Co.). After the addition of substrate (2,2′-azino-bis(3-ethylbenzothiazoine-6-sulfonic acid) diammonium salt), color intensity at 415 nm was determined by a microplate reader. Hapten inhibition experiments were performed by the addition of the increasing amount of mono- and oligosaccharides to the microtiter wells.
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3

NRK-52E Cells: Notch Pathway Analysis

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Rat proximal renal tubular epithelial cell strains (NRK-52E) were purchased from Cell Resource of Shanghai Institutes for Biological Sciences Center of Chinese Academy of Sciences Committee on Type Culture Collection Cell Bank (Shanghai, China). Dulbecco's modified Eagle's medium (DMEM)/F12 medium powder, trypsin (Gibco, Grand Island, NY, USA), high pure nitrogen of high-pressure (Shanxi Taiyuan Pharmaceutical Co., Ltd., Taiyuan, China), total RNA extraction kit, polymerase chain reaction (PCR) primers, TranScript cDNA first-strand synthesis kit, SYBR-Green I real-time PCR kits, pre-stained protein molecular weight marker (Beijing Zhongshan Science and Technology Co., Ltd., Beijing, China), ECL chemiluminescence kit (Pierce Biotechnology, Inc., Rockford, IL, USA), BCA protein assay kit (Kaiji Biological Technology Development Co., Ltd., Nanjing, China), rabbit anti-human Jag2/Notch2/hes1 and β-actin monoclonal antibody (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), horseradish peroxidase-labeled goat anti-rabbit IgG (Sigma-Aldrich, St. Louis, MO, USA) were purchased.
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4

Western Blot Analysis of Hippocampal ASIC2a

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Tissue samples from the rat hippocampal CA1 region were subjected to lysis, homogenization, and high-speed centrifugation. Supernatants were collected and stained with Coomassie Brilliant Blue G-250. Proteins separated by SDS-polyacrylamide gel electrophoresis were transferred onto nitrocellulose membrane. Membranes were blocked using 5% skimmed milk, incubated at room temperature for 120 minutes, washed four times (10 minutes each) in PBS-Tween, incubated with primary rabbit anti-rat ASIC2a and GAPDH polyclonal antibodies (1:5,000; Sigma, St Louis, MO, USA) at 4°C overnight, washed four times (10 minutes each) in PBS-Tween, incubated with horseradish peroxidase-labeled goat anti-rabbit IgG (1:2,000; Sigma) at room temperature for 120 minutes, and washed four times (10 minutes each) in PBS-Tween.
After electrochemiluminescence, developing, and photographic fixing, gray values for ASIC2a and GAPDH protein were quantitatively analyzed using Quantity One software (NaturalGene Corp., Beijing, China).
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5

Extraction and Detection of β-Glucuronidase Protein

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A total of 150 mg of leaf sample was crushed in liquid nitrogen and incubated with extraction buffer (200 mM Tris‐Cl pH 8.0, 100 mM NaCl, 400 mM Sucrose, 10 mM EDTA, 100 mM PMSF, 0.05% Tween‐20, 28.6 mM β‐mercaptoethanol, 1X Protease Inhibitor Cocktail). Proteins were allowed to extract for 30 min at 4°C with gentle shaking. Samples were centrifuged at 13,000 rpm, 4°C, and supernatant was collected. Protein quantity was estimated with Bradford using BSA standards. A total of 40 μg of protein was electrophoresed on 12% SDS‐PAGE. Thereafter, proteins were blotted on to a polyvinylidene difluoride membrane (Hybond‐PVDF, Amersham, UK) according to the manufacturer's protocol. Membrane was blocked with 5% (w/v) skimmed milk in PBST buffer for 2 h at room temperature. Membrane was thereafter incubated with rabbit anti‐β‐glucuronidase (Invitrogen) (1:1,000) for 2 h followed by three gentle washing with PBST for 5, 10, and 5 min. Subsequently, membranes were incubated with secondary antibody (horseradish peroxidase‐labeled goat anti‐rabbit IgG) (Sigma‐Aldrich, USA) in 1:10,000 dilution. Membrane was washed twice with PBST for 5 and 10 min. Thereafter, GUS signals were detected using ECL Prime western blotting detection kit (GE Healthcare Biosciences, UK) as per manufacturer's protocol. Equal amount of protein loading was assured with Ponceau‐S staining.
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6

Western Blot Analysis of EMT Markers

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Lysed samples were analyzed with the BCA kit (ThermoFisher, USA) for protein concentration determination. The proteins were separated by 12% SDS-PAGE and transferred onto the PVDF membrane. Then, the PVDF membrane was blocked using 5% skim milk for 2 h and washed in TBS-T. The primary rabbit anti-human antibodies were added for immunoblotting as followed: β-actin (42 kDa, 1:1000, ab16769, Abcam, UK), N-cadherin (100 kDa, 1:1000, ab76057, Abcam, UK), Vimentin (67 kDa, 1:1000, ab8978, Abcam, UK) and E-cadherin (125 kDa, 1:1000, ab15148, Abcam, UK). After that, the samples were incubated at 4°C overnight and washed with TBS-T for 3 times and each time for 10 min. Horseradish peroxidase-labeled goat anti-rabbit IgG (1:10,000, Sigma, USA) was added and the membrane was incubated for 1 h and washed 3 times with TBS-T. Finally, chemiluminescence coloration, exposure, development, fixing, and data analysis were performed. β-actin was applied as an internal reference.
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7

Comparative Proteomics of Colorectal Cancer Tissues

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CC patient and control tissues were collected from the Affiliated Kunshan Hospital of Jiangsu University. The patient tissues were preserved in liquid nitrogen and lysed using RIPA lysis buffer (Strong) (MedChemExpress, China). A BCA Protein Quantification Kit (Vazyme, China) was used to measure the protein concentration. Proteins were transferred to nitrocellulose membranes (Millipore, Billerica, MA, USA) after separation through 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis. Then, the membranes were incubated with primary antibodies against the following: NUP107/SEC13/ALDH7A1/ALG1/CHPF/FAM162A/FBP2/GALK1/IDH1/TGFA/VLDLR/XYLT2/OGDHL (Abcam, USA, 1:1000) and GAPDH (Abcam, USA, 1:3000). The membranes were washed and incubated with horseradish peroxidase-labeled goat anti-rabbit IgG (1:5000; Sigma). The signals were visualized using BIO-RADXR.
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8

Quantifying Bcl-2 Protein Levels

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Cells were grouped and pretreated as previously described in the FCM. The total protein was extracted, separated using SDS-PAGE and transferred to a nitrocellulose membrane. The membrane was blocked with 5% skimmed milk at room temperature for 2 h, and then stained with rabbit polyclonal anti-B-cell lymphoma 2 (Bcl-2; 1:200; BA0412) or mouse monoclonal anti-β-actin antibodies (1:200; BM0627; Wuhan Boster Biotechnology Co., Ltd., Wuhan, China) for 2 h at room temperature. Following washing, the membrane was incubated with horseradish peroxidase-labeled goat-anti-rabbit IgG (Sigma-Aldrich, St. Louis, MO, USA) at 1:1,000 for 1 h at room temperature. The membrane was then washed and developed. All experiments were repeated three times.
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9

Western Blot Analysis of Protein Expression

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At 48 h following transfection, cells were dissolved in RIPA Lysis Buffer (Beyotime Institute of Biotechnology) containing 1 mmol/l phenylmethanesulfonyl fluoride, incubated at 4°C for 2 h and then centrifuged at 14,000 × g for 20 min. The protein concentration of the supernatant was measured using a BCA Protein Assay Kit (Thermo Fisher Scientific, Inc.). Proteins (100 mg loading) were separated by electrophoresis on 10% SDS-polyacrylamide gel and transferred to polyvinylidene fluoride membrane (PVDF; Merck Millipore, Darmstadt, Germany) by wet electroblotting (Bio-Rad Laboratories, Inc.). The PVDF membrane for each sample was incubated with rabbit monoclonal antibodies (anti-HPSE, anti-VEGF and anti-β-actin), purchased from Abcam (Cambridge, UK). β-actin was used to confirm equal loading of every sample. The secondary antibody used was horseradish peroxidase-labeled goat-anti-rabbit IgG (Sigma-Aldrich). Immunoreactive bands were visualized by enhanced chemiluminescence (Merck Millipore), exposed in the luminescent image analyzer (FluorChemE; ProteinSimple; Bio-Techne, San Jose, CA, USA) and semiquantified using Quantity One software (Bio-Rad Laboratories, Inc.).
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