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4 protocols using rabbit polyclonal anti gfp

1

Western Blot and Non-Denaturing Gel Electrophoresis

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For Western blot analysis, 30 μg of proteins were transferred to PVDF membranes (Immobilon-P, Merck Millipore, Billerica, MA). For non-denaturing gel electrophoresis cell pellets were directly dissolved in an equal volume of 2x sample buffer (120 mM Tris-HCl pH 6.8, 20% glycerol, 0.1% bromophenol blue), and sodium dodecyl sulfate (SDS) removed from all gel solutions and electrophoresis buffers. Membranes were blocked for 1 h in TBS-Tween containing 5% nonfat dry milk. Rabbit polyclonal anti–NR2E3 antibody (#OAAB10504, Aviva Biosystems, San Diego, CA) was diluted 1:800, rabbit polyclonal anti-GFP 1:5’000 (#G1544, Sigma), mouse monoclonal anti-Xpress 1:500 (Invitrogen), rabbit polyclonal anti-alpha-tubulin (H300) 1:5000 (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse monoclonal anti-α-tubulin 1:40’000 (#T5168, Sigma). The secondary ECL donkey anti-rabbit IgG horseradish peroxidase (HRP) and sheep anti-mouse IgG HRP-conjugated antibodies were diluted 1:25’000 (Amersham Biosciences, Otelfingen, Switzerland) and used to detect protein expression by chemiluminescence using LumiGlo (Amersham Biosciences) in a Fujifilm LAS-4000 mini imaging system (Bucher Biotec, Basel, Switzerland). Molecular weight markers were purchased at Fermentas (PageRuler™Plus).
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2

Yeast-Based Protein Aggregation Assay

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Yeast were grown in galactose-containing media to induce protein expression for 5h (for strains expressing Hsp104s alone or with TDP-43) or 8h (for strains expressing αSyn). Cultures were normalized to OD600=0.6, and 6 mL of cells were harvested. For heat shock controls, samples were incubated at 37 °C for 30 minutes prior to processing. Yeast lysates were extracted by incubation with 0.1M NaOH at room temperature for 5 min. Lysates were mixed with SDS sample buffer, boiled for 5 min, and subjected to Tris-HCl SDS-PAGE (4-20% gradient, Bio-Rad) followed by transfer to a PVDF membrane (Millipore).
Membranes were blocked in Odyssey blocking buffer (LI-COR) for 1h at room temperature or overnight at 4 °C. Primary antibody incubations were performed at 4 °C overnight or at room temperature for 2h. After washing with PBST, membranes were incubated with fluorescently labeled secondary antibodies at room temperature for 1h, followed by washing with PBST. Proteins were detected using an Odyssey Fc Dual-Mode Imaging system. Primary antibodies used: mouse monoclonal anti-FLAG M2 (Sigma-Aldrich), rabbit polyclonal anti-TDP-43 (Proteintech), rabbit polyclonal anti-GFP (Sigma-Aldrich), mouse monoclonal 3-phosphoglycerate kinase (Novex), rabbit polyclonal anti-Hsp26 (Johannes Buchner, TU-Munich), fluorescently labeled anti-mouse and antirabbit secondary antibodies (Li-Cor).
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3

Western Blot Analysis of FKBP12 and GFP

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Whole cell lysates were prepared from asynchronous populations of cells. Western blot analysis was performed using the following antibodies: rabbit anti-FKBP12 polyclonal (1:2,000; ab2918; Abcam), rabbit anti-GFP polyclonal (1:10,000; a gift from B. Black), and mouse anti-tubulin monoclonal DM1α (1:10,000; Sigma-Aldrich).
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4

Yeast Protein Extraction and Western Blot

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Yeast were grown overnight in raffinose supplemented media and then induced with galactose for 5h at 30°C. Cultures were normalized to A600nm = 0.5, 9 mL cells were harvested, treated in 0.1M NaOH for 5min at room temperature, and cell pellets were then resuspended into 1x SDS sample buffer and boiled for 3min. Lysates were cleared by centrifugation, separated by SDS-PAGE (4–20% gradient, BioRad), and transferred to a PVDF membrane. Membranes were blocked in Odyssey Blocking Buffer (LI-COR) for 1h at room temperature. Primary antibody incubations were performed at 4°C overnight. Membranes were incubated in secondary antibodies for 1h at room temperature. Membranes were imaged using a LI-COR Odyssey FC Imaging system. Antibodies used: rabbit anti-MATR3N-terminus monoclonal (Abcam), rabbit anti-GFP polyclonal (Sigma Aldrich), mouse anti-GFP monoclonal (Roche Applied Science), rabbit anti-Hsp104 polyclonal (Enzo Life Sciences), mouse anti-PGK monoclonal (Invitrogen), and fluorescently labeled anti-mouse and anti-rabbit secondary antibodies (LI-COR).
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