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Alexa fluor 546 donkey anti rabbit igg

Manufactured by Thermo Fisher Scientific
Sourced in United States

Alexa Fluor 546 donkey anti-rabbit IgG is a fluorescent secondary antibody used for detection in immunoassays. It is conjugated with the Alexa Fluor 546 dye, which emits fluorescence in the orange-red region of the visible spectrum.

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47 protocols using alexa fluor 546 donkey anti rabbit igg

1

Spirodalesol Analogs Preparation and Evaluation

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The chemical structures of spirodalesol and its analogs are listed in Fig. S1. Compounds were dissolved at a concentration of 30 mM in 100% DMSO as a stock solution (stored at −20 °C) and diluted with a medium when used. The final concentration of DMSO did not exceed 0.1% throughout the study (all control groups contained 0.1% DMSO). LPS from Escherichia coli (0111: B4), phorbol myristate acetate (PMA), LPS, and ATP were purchased from Sigma-Aldrich. Alanine transaminase and aspartate aminotransferase activity assay kits were purchased from the Nanjing Jiancheng Bioengineering Institute. RPMI-1640, FBS, Alexa Fluor 546 donkey anti-rabbit IgG, and Alexa Fluor 488 donkey anti-mouse IgG (H + L) were purchased from Life Technology. Anti-CD11b-PE was purchased from eBioscience. Anti-p-p65, anti-p65, anti-NLRP3, and anti-CASP1 antibodies were purchased from Cell Signaling Technology. Anti-cleaved CASP1 (p20) (cleaved-Asp210) was purchased from Tigergene. Anti-ASC was purchased from Santa Cruz. ELISA kits for murine TNF-α, IL-1β, IL-6, and human IL-1β were purchased from Dakewe Biotech Co Ltd. The FAM-FLICA CASP1 assay KIT was purchased from Immunochemistry Technologies, LLC. MCC950 (T3701) was purchased from Target Molecule Corp. All other chemicals were purchased from Sigma-Aldrich.
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2

Antibody-based Protein Detection Protocol

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Antibodies used in this study include the following: rabbit monoclonal anti-RRAGA (Cell Signaling Technology, 4357); rabbit monoclonal anti-CRYAB (GeneTex, GTX61997); rabbit monoclonal anti-mTOR (Cell Signaling Technology, 2983); rabbit monoclonal anti-p-mTOR (Ser2448) (Cell Signaling Technology, 5536); HRP-conjugated mouse monoclonal anti-GAPDH (Kangchen, KC-5G5); mouse monoclonal anti-GFP (Santa Cruz, SC-9996); mouse monoclonal anti-luciferase (LSBio, LS-C71819); Alexa Fluor 546 donkey anti-rabbit IgG (Life Technologies, A10040); and Alexa Fluor 488 goat anti-mouse IgG (Life Technologies, A-11001); HRP-conjugated goat anti-rabbit IgG (BioRad, 170–6515).
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3

Immunofluorescence Imaging of 3T3-L1 Adipocytes

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The 3T3-L1 preadipocytes were grown on coverslips and followed by a treatment according to the experimental plan. After being treated for the appropriate times, the cells were immobilized with 4% PFA for 15 min, permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, USA) for 10 min at room temperature, and then blocked with 10% goat serum (Jackson Immuno-Research, USA) for 1 h at room temperature. The coverslips were incubated overnight with primary antibody at 4 °C: rabbit anti-HA (used at 1:800 dilution, CST), and mouse anti-FLAG (used at 1:200 dilution, Sigma-Aldrich). Secondary antibodies were incubated for 1 h at 37 °C: Alexa Fluor 488 donkey anti-mouse IgG (used at 1:1000 dilution, Life Technologies), and Alexa Fluor 546 donkey anti-rabbit IgG (used at 1:1000 dilution, Life Technologies). The cells were incubated with BODIPY 493/503 (used at 1:1000 dilution, Invitrogen) for 10 min at room temperature and with DAPI (used at 1:1000 dilution, Invitrogen) for 5 min. Images were captured by confocal microscopy and visualized with ZEN software.
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4

Immunofluorescent Staining of Adipocyte Markers

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For immunofluorescent staining of SC35/SRSF2 and UCP1 in primary adipocytes, cells were fixed with cooled ethanol (95%) and glacial acetic acid (5%) (10 min, −20°C), permeabilized by Triton X‐100 (0.3%, 10 min), blocked with donkey serum (10% in PBST with Triton X‐100 (0.3%), 2 h), incubated with primary antibodies against SC35 (mouse anti‐SC35, Abcam ab11826, diluted 1:100 in PBST with Triton X‐100 (0.3%) and donkey serum (1%), overnight) or against UCP1 (rabbit anti‐UCP1, Abcam, diluted 1:200 in PBST with Triton X‐100 (0.3%) and donkey serum (1%), overnight) and fluorophore coupled anti‐mouse or anti‐rabbit secondary antibodies (Alexa Fluor 647 donkey anti‐mouse IgG, Life Technologies or Alexa Fluor 546 donkey anti‐rabbit IgG, Life technologies, both diluted 1:500 in PBST with donkey serum (1%). Slides were mounted with Vectashield Mounting Medium with DAPI for nuclear counterstain (Vector Labs), sealed with a coverslip and nail polish, and visualized with 60× oil immersion objective in a confocal laser‐scanning microscope (Olympus FluoView FV10i). Fluorescent signals were quantified with ImageJ software.
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5

Lipid Droplet Quantification in Cells

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BODIPY 493/503 (#D3922) and DAPI (#D1306) were purchased from Invitrogen (CA, USA). SKL2001 was purchased from Selleckchem (Shanghai, China). Dexamethasone (#D4902), 3-isobutyl-1-methylxanthine (#I5879), insulin (#I2643), Oil red O (#O9755), MS-222 (#E10521), and Triton X-100 (#T8787) were purchased from Sigma-Aldrich (MO, USA). Antibodies against P42/44 (#9102), β-catenin (#9562), Phospho-β-catenin (#9561), PPAR-γ (#2443), Ubiquitin (#3936), GAPDH (#5174), HA-tag (#3724) as well as secondary HRP-conjugated antibodies against mouse (#7076) and rabbit (#7074) were purchased from CST (MA, USA) and used at 1:1,000 dilution for western blotting. Anti-FLAG-tag antibody (#F1804) and anti-FLAG-tag M2 affinity gel (#A2220) were from Sigma-Aldrich (MO, USA). Antibodies against Plin1 (#A16294), OSBPL2 (#A14199), α-Tubulin (#AC012), β-catenin (#A11512) as well as secondary HRP-conjugated Mouse Anti-Rabbit IgG Light Chain (#AS061) were from ABclonal (Wuhan, China). Antibodies against β-catenin (#BF0319) for zebrafish were from Affinity Biosciences (Changzhou, China). Alexa Fluor 488 donkey anti-mouse IgG and Alexa Fluor 546 donkey anti-rabbit IgG were purchased from Life Technologies (CA, USA).
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6

Immunofluorescence Colocalization Analysis

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Cells were grown on coverslips in 24-well plates overnight. The samples were fixed in 10% formalin, and then were penetrated with 0.1% triton X-100 (Sigma). Then, the samples were blocked with goat serum (used at 1:10 dilution, #16210064, Gibico, USA) for 1 h at room temperature, and incubated overnight with primary antibodies (used at 1:100 dilution) at 4 °C. The next day, the samples were wash with PBST and incubated with secondary antibodies for 1 h at 37 °C: Alexa Fluor 546 donkey anti-rabbit IgG (used at 1:1000 dilution, #A10040, lifetech) or Alexa Fluor 488 donkey anti-mouse IgG (used at 1:1000 dilution, #A21202, lifetech). The nucleus was stained with DAPI (#F6057, Sigma-Aldrich, USA). Images were acquired by laser scanning confocal microscope. The Immunofluorescence colocalization analysis was performed with scatter J (a plugin for ImageJ), the presence of colocalization is defined as pearson’s coefficient value > 0.5.
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7

Evaluation of MI-2 and Mepazine Compounds

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MI-2 and mepazine (chemical structure shown in Figure 1A, synthetic compounds provided by Eternity Bioscience Inc. NJ, USA) was dissolved at a concentration of 30 mM in 100% DMSO as a stock solution, stored at −20°C, and diluted with medium before each experiment. The final DMSO concentration did not exceed 0.1% throughout the study (all the control groups are composed of 0.1% DMSO). Cyclosporine A (CsA), phorbol myristate acetate (PMA), lipopolysaccharide (LPS) and adenosine triphosphate (ATP) were purchased from Sigma-Aldrich (St. Louis, MO). Dextran sulfate sodium (DSS, 36–50 kDa) was bought from MP Biomedicals (Aurora, OH). Myeloperoxidase (MPO) activity assay kit was purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). RPMI-1640, FBS, Alexa Fluor 546 Donkey Anti-Rabbit IgG and Alexa Fluor® 488 Donkey Anti-Mouse IgG (H+L) were purchased from Life technology (Carlsbad, CA). Anti-phospho-IκBα, anti-phospho-IKKα/β, were purchased from Cell Signaling Technology (Beverly, MA). Anti-NLRP3, anti-phospho-p65 and anti-CASP1 were purchased from Epitomics (Burlingame, CA). Anti-ASC and anti-COX2 were purchased from Santa Cruz (Santa Cruz, CA). ELISA kits for murine TNF, IL-1β, IL-6, IFN-γ and human IL-1β were purchased from Dakewe Biotech Co. Ltd (Beijing, China). All other chemicals were purchased from Sigma-Aldrich (St. Louis, MO).
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8

Spatial Localization of Bacteria and Fluorescent Markers in Tumor Sections

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The locations of bacteria and ZsGreen in tumors was determined with immunofluorescence. Paraffin-embedded tumor sections were rehydrated and treated with sodium citrate buffer (10 mM Sodium Citrate, 0.05% Tween 20, pH 6.0) for 20 min at 65°C for antigen retrieval. Sections were blocked with protein block (Dako, Santa Clara, CA); stained with two primary antibodies, 1:100 rabbit anti-RCFP polyclonal antibody (Clontech) and 1:10 FITC-conjugated, anti-Salmonella antibody (Abcam, Cambridge, MA); and washed with TBS-T. A secondary antibody, Alexa Fluor 546-donkey-antirabbit IgG (Life Technologies, Carlsbad, CA), was applied at 1:100. 4′,6-Diamidino-2-phenylindole (DAPI) was applied to stain cell nuclei and identify necrosis. Immunofluorescent images were acquired with an inverted epifluorescent microscope (Olympus, Tokyo, Japan) with a 10x Plan-APO fluorescence objective and an automated script written in IPLab (BD Biosciences, Rockville, MD). The script assembled a tiled montage of individual images acquired using three fluorescent filters (Chroma, Bellows Falls, VT): D350/50x (DAPI), D546/10x (ZsGreen) and D455/70x (Salmonella).
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9

Immunohistochemical Analysis of Hippocampal Neurons

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Brains were perfused and post-fixed with 4% paraformaldehyde at 4 °C for 12–16 h, cryoprotected in 30% sucrose and embedded in optimum cutting temperature compound (OCT). Coronal sections (20 μm thick) were obtained using a Leica cryostat (CM 3050S). Immunostaining was performed as previously described [11 (link)]. Chicken anti-GFP (Abcam, ab13970, 1:500) and rabbit anti-FOXG1 (Abcam, AB18259, 1:500) were used as primary antibodies, and Alexa Fluor 488 goat anti-chicken IgG (Molecular Probes, A11039, 1:500) and Alexa Fluor 546 donkey anti-rabbit IgG(Molecular Probes, A10040, 1:500) were used as secondary antibodies. DAPI (Sigma, D9564, 1:1000) was incubated for 15 min (mins) before coverslips were applied. Images were captured by a confocal microscope (Olympus, FV1000). For cell counting, three brains from each genotype from at least two different litters were collected and images of two consecutive hippocampal slices of each brain were used; the dorsal hippocampus was outlined using ImageJ software (NIH), and CA1 cell numbers were counted manually based on the DAPI staining.
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10

Detecting Autophagy and Apoptosis in Osteoblasts

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To detect autophagy in osteoblasts, the cells were stained with an anti-LC3 antibody (Sigma-Aldrich, L7543) at 4°C overnight. For detecting autophagy and apoptosis in calvarias, the sections described above (hematoxylin-eosin staining) were incubated with anti-LC3 (Sigma-Aldrich, L7543), anti-cleaved CASP3 (Cell Signaling Technology, 9664) and anti-BGLAP/OCN (Santa Cruz Biotechnology, sc-390877) antibodies at 4°C overnight as previously reported.26 (link) The secondary antibody, Alexa Fluor 546 donkey anti-rabbit IgG (Molecular Probes, A10040) or Alexa Fluor 488 donkey anti-mouse IgG (Molecular Probes, A21202), was applied at 37°C for 1 h followed by staining of the nuclei with 4, 6-diamidino-2-phenylindole (DAPI, Beyotime, C1005). Cells and sections were photographed using a Nikon confocal microscope (C2+, Nikon, Tokyo, Japan).
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