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17 protocols using salmonella shigella agar

1

Streptomycin-Induced Salmonella Typhimurium Infection

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For streptomycin treatment experiments, C57BL/6J SPF mice were gavaged with a single dose of 20 mg of streptomycin 24 hours before infection. Bacterial cultures of different S. Typhimurium strains were washed and re-suspended in sterile phosphate-buffered saline (PBS) at 107 CFU/mL. Mice were gavaged with 100 μL of the bacterial suspension (106 CFU). Leftover inocula were serially diluted and plated to confirm the number of CFU administered.
For 48 h infection experiments, mice were euthanized 48 hours after S. Typhimurium gavage. Colony-forming units (CFU) in the livers and mesenteric lymph nodes (mLN) were determined by plating five serial dilutions of livers or mLN suspended in sterile 0.1% Triton X-100 PBS on Salmonella Shigella agar (BD 211597). Resulting quantities were normalized to liver or mLN weight.
For S. Typhimurium infection survival assay, mice weight loss was monitored starting just before infection, and mice were euthanized when they reached 80% baseline weight, appeared hunched or moribund, or exhibited a visibly distended abdomen (indicative of peritoneal effusion), whichever occurred first. Death was not used as an end point.
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2

Streptomycin-Induced Salmonella Typhimurium Infection

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For streptomycin treatment experiments, C57BL/6J SPF mice were gavaged with a single dose of 20 mg of streptomycin 24 hours before infection. Bacterial cultures of different S. Typhimurium strains were washed and re-suspended in sterile phosphate-buffered saline (PBS) at 107 CFU/mL. Mice were gavaged with 100 μL of the bacterial suspension (106 CFU). Leftover inocula were serially diluted and plated to confirm the number of CFU administered.
For 48 h infection experiments, mice were euthanized 48 hours after S. Typhimurium gavage. Colony-forming units (CFU) in the livers and mesenteric lymph nodes (mLN) were determined by plating five serial dilutions of livers or mLN suspended in sterile 0.1% Triton X-100 PBS on Salmonella Shigella agar (BD 211597). Resulting quantities were normalized to liver or mLN weight.
For S. Typhimurium infection survival assay, mice weight loss was monitored starting just before infection, and mice were euthanized when they reached 80% baseline weight, appeared hunched or moribund, or exhibited a visibly distended abdomen (indicative of peritoneal effusion), whichever occurred first. Death was not used as an end point.
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3

Isolation and Identification of Salmonella

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The samples for Salmonella isolation and identification were tested using the ISO 6579 protocol. After incubation, the pre‐enriched media (TSB) were cultured in a ratio of 1:10 on tetrathionate broth (HiMedia, LOT no. M032) and in a ratio of 1:100 on Rappaport Vassiliadis medium (HiMedia, LOT no. M880), followed by incubation at 37 and 42°C, respectively. After the incubation period, the cultures were streaked on xylose–lysine–deoxycholate agar (Merck, LOT no. 105287) and Salmonella‐Shigella agar (BD, LOT no. 274500) media. Suspected colonies for Salmonella spp. (H2S‐producing and non‐lactose fermenter colonies) were selected for confirmatory biochemical tests. Isolates were cultured on Triple Sugar–Iron agar (HiMedia, LOT no. 211825), SIM medium (BD, LOT no. 211578), urea agar (Merck, LOT no. 108492), lysine iron agar (BD, LOT no. 211363), Simmons citrate agar (HiMedia, LOT no. M099) and Methyl Red‐Voges Proskauer broth (HiMedia, LOT no. GM070) for further confirmation of Salmonella spp. ONPG disks (HiMedia, LOT no. DD008) were used to detect the beta‐galactosidase activity of late lactose fermenters (Bahramianfard et al., 2021 (link)).
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4

Enumeration of Cecal Microbiota in Poultry

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The composite cecal material sample (1 g) of each hen was diluted with 9 mL of 0.9% saline solution and mixed using a vortex. Viable counts of bacteria in the cecal samples were then estimated by plating serial 10-fold dilutions (in 1% peptone solution) on lactobacilli de Man, Rogosa, and Sharpe (Lactobacilli MRS), MacConkey, and Salmonella shigella agar plates (Difco Laboratories, Becton Dickinson, Franklin Lakes, NJ, USA) in order to isolate Lactobacillus, Escherichia coli, and Salmonella, respectively. The Lactobacilli MRS plates were then incubated for 48 h at 37°C under anaerobic conditions, and the MacConkey and Salmonella shigella plates were incubated for 24 h at 37°C under aerobic conditions. Lactobacillus, E. coli, and Salmonella colonies were counted immediately after removal from the incubator.
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5

Salmonella Gallinarum Isolation Quantification

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Re-isolation numbers for Salmonella Gallinarum was determined for liver, spleen, and feces collected from each sacrificed chicken at 5 dpi. In addition, feces were retrieved from sterilized paper that was used to line the chicken's housing unit. For non-selective pre-enrichment processing, 0.1 g of tissue and feces from the cecum of each sample were aseptically collected and added to 10 mL of sterile Buffered Peptone Water (Sigma-Aldrich), homogenized completely, and incubated at 37℃ for 24 h. Then, the homogenate was transferred from 1 mL of the pre-enrichment broth to 10 mL Tetrathionate Broth (TTB; Difco Laboratories) and incubated at 37℃ for 24 h for selective enrichment processing. The TTB was serially diluted 10-fold in PBS, and 50 µL of each dilution was spread onto a Salmonella Shigella agar (Difco Laboratories) plate and incubated at 37℃ for 24 h. The resulting characteristic black-colored colonies were counted and expressed as CFU/0.1 g tissue, but only for those plates with counts of 30 to 300 colonies per plate.
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6

Diverse Microorganism Isolation Protocols

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Different media cultures were employed to isolate or count the most diverse microorganisms in the samples. More precisely, a volume of 50 μL of the previous aliquot (pellet sample suspended in sterile distilled water) was incubated on MacConkey agar (Difco Laboratories Inc.) at 37 ºC for 18 to 24 h for the recovery of the genus Escherichia; on Salmonella-Shigella agar (Difco Laboratories Inc.) for the cultivation of Salmonella and Shigella genera at same conditions; on Legionella CYE agar (Difco Laboratories Inc.) at 35 ºC for 48 h to isolate Legionella spp.; and on Campylobacter agar for the isolation of Campylobacter spp. at 37 ºC for 18 to 24 h. Finally, for the quantification of Escherichia coli and total coliforms, successive dilutions of the initial aliquot were cultured in Chromocult agar medium (Biolab Laboratories, Merck Inc.) through classic dilution method62 (link), and the results were obtained after 24–48 h of culture.
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7

Cecal Bacterial Profiling in Poultry

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On d 100, cecal contents from 8 birds per treatment were gathered into individual, sterile culture tubes and immediately transported to the laboratory for immediate examination. In the analytical procedure, a gram from each cecal sample was amalgamated with 9 mL of sterile peptone broth (Becton, Dickinson and Company, Sparks, MD) and subjected to a 60-s vortexing. To ascertain the viable bacterial counts present, 10-fold serial dilutions (spanning from 10−1 to 10−8) were methodically plated on distinct agar mediums: Lactobacilli MRS agar (Difco Laboratories, Detroit, MI) for lactic acid bacteria, MacConkey agar (Difco Laboratories, Detroit, MI) for coliform bacteria, and Salmonella-Shigella agar (Difco Laboratories, Detroit, MI) for Salmonella. Postplating, Lactobacilli agar plates were incubated anaerobically at 37°C for a 24-h duration, while both MacConkey and Salmonella-Shigella agar plates were aerobically incubated at the same temperature and time frame. Postincubation, bacterial colonies specific to Lactobacillus, E. coli, and Salmonella were enumerated, with the results articulated in the logarithm of colony-forming units per gram (log10 CFU/g).
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8

Quantitative Analysis of Gut Microbial Populations

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One gram of collected sample from the cecum was diluted with 9 mL of sterile peptone water and mixed for 1 min on a vortex stirrer. Samples were serially blended from 10−1 to 10−6, and were injected by 50 μL in 3 selective agar media as follows; Lactobacilli MRS agar (Difco Laboratories, Detroit, MI, USA) for Lactobacillus spp., coliform bacteria for MacConkey agar (Difco Laboratories, Detroit, MI, USA) and Salmonella-Shigella (SS) agar (Difco Laboratories, Detroit, MI, USA) for Salmonella. Plates were then incubated aerobically at 37°C for 24 h (MacConkey agar and SS agar) or anaerobically at 37°C for 24 h (Lactobacilli MRS agar). The viable colonies of the respective bacteria were counted and expressed as the log 10 of colony-forming units (cfu) g−1 of cecal content.
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9

Intestinal Microbial Enumeration in Broilers

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Fresh intestinal samples from each treatment were taken at the end of the experiment. A total of 15 broilers per treatment were slaughtered and sampled after a 12-h feed withdrawal. Their large and small intestines were used to enumerate Lactobacillus, E. coli and Salmonella. Small intestinal digesta were collected from a 4–5 cm segment between the front and rear parts of the Meckel's diverticulum. Large intestinal digesta were collected from a 2–3 cm front part of the cloaca. To enumerate intestinal Salmonella, approximately 200 mg of sample was diluted 10 fold by blending them with anaerobically sterilized phosphorus buffered saline (PBS, 0.1 M, pH 7.0) and homogenized. Afterwards, a 0.1 ml sample was serially diluted 103∼107 and spread onto sterilized flat Rogosa agar (Difco Laboratories, Detroit, MI, USA), Salmonella-Shigella (SS) agar (Difco Laboratories, Detroit, MI, USA), and MacConkey's agar (Difco Laboratories, Detroit, MI, USA) for Lactobaicllus, Salmonella, and Escherichia coli culture. Lactobacillus medium agar plates were then incubated anaerobically at 37°C for 48 h. Salmonella and E. coli medium agar plates were incubated at 37°C for 24 h under aerobic conditions. Colonies on each flat medium were counted using a colony counter. Results were transformed as colony-forming units (CFU) at log10 per gram.
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10

Quantifying Intestinal Bacterial Load

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To quantify intestinal bacterial loads, 6 animals were rinsed using drops of S buffer and allowed to crawl free of bacteria on a sterile plate. These animals were transferred into 100 μL of PBS plus 0.01% Triton X-100 and ground individually. Serial dilutions of worm homogenate were seeded on Salmonella-Shigella agar (BD BBL) plates, and plates were incubated at 37°C overnight. Single colonies were counted the next day and represented as the number of bacterial cells or CFU per animal.
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