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12 protocols using sr b1

1

Western Blot Analysis of Cell Protein Expression

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For Western blotting, cells were lysed using RIPA buffer. Equal amounts of protein (30 μg) were loaded and separated by 8% SDS-PAGE. Separated proteins were electrophoretically transferred to a nitrocellulose membrane, blocked with 5% (w v− 1) skim milk solution for 1 h, and then incubated with primary antibodies to CD36 (Santa Cruz Biotechnology, Inc., CA, USA; Cat. No. sc-9154), SR-B1 (Abcam, Inc.; Cat. No. ab-106,572), ABCA1 (Abcam, Inc.; Cat. No. ab-18,180) and GAPDH (Abcam, Inc.; Cat. No. ab-181,602), respectively, overnight at 4 °C. Blots were visualized by an ECL system (Pierce).
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2

Immunofluorescence Imaging of HepG2 Cells

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Immunofluorescence of HepG2 cells was performed by following the previously described protocol [17 (link)]. Cells were fixed in paraformaldehyde (4% in PBS) and incubated overnight with appropriate antibodies: HMGCR (Abcam, ab242315, dilution 1:100), SREBP-2 (Abcam, ab30682, dilution 1:100), SREBP-1 (Santa Cruz Biotechnology, Dallas, TX, USA, sc-8984, dilution 1:100), SR-B1 (Abcam, ab52629, dilution 1:100), LDLr (Santa Cruz Biotechnology, sc-11824, dilution 1:200), anti-Perilipin-2 (anti-Plin2) antibody (R&D Systems, #MAB76341, dilution 1:100). After incubation with primary antibodies, fixed cells were probed for 1 hour at room temperature with donkey anti-goat secondary antibody Alexa Fluor 488 (ThermoFisher Scientific, Milan, Italy, A-11055), goat anti-rabbit secondary antibody Alexa Fluor 555 (ThermoFisher Scientific, A27039) and goat anti-rabbit secondary antibody Alexa Fluor 488 (ThermoFisher Scientific, A-11008). Coverslips were mounted with Vectashield Antifade mounting medium with DAPI (Vector, H-1200) to visualize nuclear staining. The samples were examined at confocal microscopy (TCS SP8; Leica, Wetzlar, Germany). Images were captured using Leica TCS SP8 equipped with a 40 × 1.40–0.60 NA HCX Plan Apo oil BL objective at RT and Leica LAS X Software.
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3

Immunohistochemical Analysis of ASGR in Liver Tissue

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Human liver tissue arrays were purchased from US Biomax (Derwood, MD). ASGR staining IHC was performed as previously described.39 The ASGR staining was reviewed by the pathologist (S.K.) and quantified in H-scores using the following equation: H-score = (“3+” % cells) *3 + (“2+” % cells)*2 + (“1+” % cells)*1 + (0% cells)*0, where “0” means no staining; and “1+, 2+, and +3” mean weak, moderate, and strong staining, respectively. Samples containing no tumor cells or of mixed HCC-cholangiocarcinoma (CCA) or with unknown tumor grade were excluded from the calculation of H-scores. Antibodies specific for ASGR (Proteintech, Rosemont, IL), cleaved active caspase-3 (Cell Signaling Technology, Danvers, MA), SR-B1 (Abcam, Cambridge, MA), and ASO were used at 1:100, 1:400, and 1:10,000 dilutions, respectively. The antibody specific for MyD88 (Novus Biologicals, Littleton, CO) was used at 2.5 μg/mL. For fluorescent IHC, spheroids were fixed in 4% paraformaldehyde and incubated with mouse anti-ASGR antibody (Santa Cruz Biotechnology, Dallas, TX) at 4°C overnight, followed by staining with Cy3-conjugated goat anti-mouse immunoglobulin G (IgG) antibody (Beyotime, Haimen, China) and co-staining with DAPI at room temperature for 30 min.
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4

Protein Expression Analysis in RAW264.7 Cells

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After treatment with PMFs and ox-LDL for 24 h, RAW264.7 cells were washed with PBS twice and lysed with RIPA on ice for 30 min. The protein concentration was determined by the BCA protein assay kit (Beyotime Biotechnology, Shanghai, China). In total, 40 μg proteins were separated on 8% SDS-PAGE gels and transferred to the polyvinylidene difluoride (PVDF) membrane (250 mA, 90 min). Then, the blots were blocked with 5% bovine serum protein for 1.5 h and incubated with the antibodies overnight at 4°C. The following antibodies were used: SRA1 (1:1,000), CD36 (1:1,000), ABCG1 (1:1,000), PPARγ (1:1,000), and LXRα (1:1,000) were purchased from Affinity Biosciences (Jiangsu, China). SRB1 (1:2,000) was purchased from Abcam (Cambridge, England). GAPDH (1:1,000) was purchased from Cell Signaling Technology Inc. (Boston, MA, United States). Followed by the appropriate HRP-conjugated rabbit anti-rabbit IgG (1:5,000, Cell Signaling Technology Inc., Boston, MA, United States) for 1 h, visualized by the enhanced chemiluminescence (ECL) reagent and exposed to Gel Doc XR+ (Bio-Rad, Hercules, CA, United States). The bands density was analyzed and calculated using the Image Lab software.
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5

Lipidomic Profiling of Metabolic Disorders

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Antibody against LDLR (Cat # ab-30532),  MCT-1 (Cat # ab-90582), MCT-3 (Cat # ab-60333) and SR-B1 (Cat # 217318) were purchased from Abcam (Cambridge, UK); antibodies against FASN (Cat # sc-55580), MCT-4 (Cat # sc-50329), MCT-2 (Cat # sc-166925), LDHA (Cat # sc-137244), LXRα/β (Cat # sc-377260), ACAT-1 (Cat # sc-517387), ACAT-2 (Cat # sc-293307), phospho-ERK (Tyr 204) (Cat # sc-7383), ERK (Cat # sc-154), Cyclin A (Cat # sc-751), CDK 2 (Cat # sc-163), Cyclin E (Cat # sc-198), β-tubulin (Cat # sc-9104), GAPDH (Cat # sc-20357), β-actin (Cat # sc-1615), and HRP conjugated secondary antibodies: anti-rabbit (Cat # sc-2030), anti-mouse (Cat # sc-2031), anti-goat (Cat # sc-2033) were purchased from Santa Cruz Biotechnology (CA, USA). Human LDL cholesterol (Cat # 360–10) and human HDL cholesterol (Cat # 361–10) were purchased from Lee Biosolution (MO, USA); Water soluble-free cholesterol and Dextran sodium sulfate (DSS) (Cat # 160110) were purchased from MP Biomedicals (CA, USA). Azoxymethane (AOM) (Cat # A5486), 2-Deoxy-D-glucose (2-DG) (Cat # D8375) and Oxamate (Cat # O2751) were purchased from Sigma Aldrich (MO, USA).
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6

Protein Extraction and Western Blot Analysis

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Protein was extracted from cells using M-PER mammalian protein extraction reagent (Thermo scientific) with protease inhibitor (Thermo Scientific, Marietta, OH). Twenty-five microgram of protein per lane were denatured in loading buffer and subjected to SDS-PAGE. Primary antibody SR-B1 at the dilution of 1:1,000 (Abcam) and ASTER-B at the dilution of 1:500 (Proteintech) were incubated overnight in 4% BSA (Sigma Aldrich). Secondary anti-rabbit IgG antibody (Abcam) was incubated for 1 h at room temperature at 1:10,000 dilution. For confirming subcellular fractionation, markers for cytosol β-actin at the dilution of 1:2,000 (Cell signaling), mitochondria COX IV at the dilution of 1:1,000 (Cell signaling), and PM SR-B1 at a dilution of 1:1,000, and ASTER-B at a dilution of 1:500 were used as primary antibodies and incubated overnight in 4% BSA (Sigma Aldrich). Secondary anti-rabbit IgG antibody (Abcam) was incubated for 1 h at room temperature at 1:10,000 dilution. Western blots were scanned with the Odyssey Imaging System (LI-COR Biosciences) for chemiluminescence detection.
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7

Hepatic Protein Expression Analysis

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The total hepatic cell protein levels were assayed using a BCA Protein Assay kit (Beyotime, Shanghai, China). Lysates (50 μg total protein) were mixed with 5× sample buffer, heated to 100°C for 5 min, and separated using 10% sodium dodecyl-sulfate polyacrylamide gel electrophoresis. The resolved proteins were transferred onto a 0.45 μm PVDF membrane using a Mini-Protean 3 electrophoresis system (Bio-Rad, USA). Non-specific binding sites on the membranes were blocked by incubation with a buffer containing 5% (w/v) non-fat milk. The membranes were probed with primary rabbit anti-mouse antibodies against LDLR (1:2,500; Epitomics, Burlingame, USA), LRP (1:2,500; Epitomics, Burlingame, USA), SDC1 (1:1,000; Abcam, Cambridge, USA), SRB1 (1:5,000; Abcam, Cambridge, USA), and β-actin (1:3,000; Santa Cruz Biotechnologies, Santa Cruz, USA). Immunoreactive bands were detected by incubation with horseradish peroxidase-conjugated secondary antibodies (1:3,000; Santa Cruz Biotechnologies, Santa Cruz, USA) and visualized by chemiluminescence. Protein bands were quantified using the Quantity One software (Bio-Rad, Hercules, USA) and normalized to the corresponding β-actin bands.
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8

Western Blot Analysis of Cellular Proteins

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Western blot analysis was performed using standard procedures. Tissues and cells were lysed in Mammalian Protein Extraction Reagent (Thermo Scientific, Waltham, USA) containing a protease inhibitor cocktail (Roche Diagnostic, Indianapolis, USA). The proteins were separated by 12% polyacrylamide/bisacrylamide gel electrophoresis and transferred to PVDF membranes (Millipore, Billerica, USA). The proteins were probed with primary antibodies followed by a HRP-conjugated secondary antibody. Immunodetection was carried out with the Immobilon Western Chemiluminescent HRP substrate (Millipore). Normalization was conducted by blotting the same samples with an antibody against β-actin. Densitometry of the protein bands was quantified with Quantity One software (Bio-Rad), and the values were expressed relative to β-actin (control for loading and transfer). At least three independent experiments were performed for each cell type studied. Primary antibodies against the following proteins were used: CPT1A, pPI3K, Akt, pAkt, SRB1, CD36, β-actin, and PPARα (1:5000; Abcam); Bcl-2, Bax, and Caspase 3 (1:3000; Affbiotech, Cincinnati, USA); and PGC1α (1:1000; Cell Signaling Technology, Beverly, USA).
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9

Western Blot Analysis of Exosomal Proteins

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For Western blot, 20 μg of total protein extract or 10 μg of exosomal protein were resolved on Tris/Glycine/SDS pre-cast polyacrylamide gels (a 4–20% gradient, Bio-Rad, 30 minutes at 200 volts). Proteins were transferred onto polyvinylidene fluoride (PVDF) membranes. The membranes were blocked in 5% milk in Tris-buffered saline containing 0.1% Tween 20 (TBST). The membranes were incubated with d primary antibodies (diluted in blocking solution) overnight at 4 °C, was washed 3 times in 0.1% TBST (10 minutes/wash) and incubated with the appropriate HRP-conjugated secondary antibody in blocking buffer for 1 hour at room temperature. The membranes were then washed in 0.1% TBST (3 × 10 min) and developed with ECL kit (GE Healthcare). Antibodies: CD81 and GM130 (Santa Cruz Biotechnology), SR-B1 (Abcam), β-Actin (Cell Signaling Technology)
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10

Protein Extraction and Immunoblotting

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Cells or tissues were lysed on ice with ice-cold lysis buffer containing 50 mm Tris-HCl, pH 7.4, 0.1 mm EDTA, 0.1 mm EGTA, 1% Nonidet P-40, 0.1% sodium deoxycholate, 0.1% SDS, 100 mm NaCl, 10 mm NaF, 1 mm sodium pyrophosphate, 1 mm sodium orthovanadate, 1 mm Pefabloc SC, and 2 mg/ml protease inhibitor mixture (Roche Diagnostics) and samples prepared. Total protein (25 µg) was loaded into SDS-PAGE followed by transfer to nitrocellulose membranes. Immunoblotting was performed with the following primary antibodies: LDLR (ab30532, Abcam), SR-B1(ab137829, Abcam), ALK-1 (70R-49334, Fitzgerald), DNM2 (ab65556, Abcam), GAPDH (2118, Cell Signaling Technology), eNOS (sc-7271, Santa Cruz Biotechnology), BMPR2 (612292, BD Biosciences), CAV-1 (610060, BD Biosciences), β-actin (sc-69879, Santa Cruz Biotechnology), HSP90 (610419, BD Biosciences). LI-COR compatible fluorescent-labeled secondary antibodies (LI-COR Biosciences). Bands were visualized on the Odyssey CLx platform (LI-COR Biosciences). Quantifications were based on densitometry using ImageJ.
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