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11 protocols using esquire 3000 plus spectrometer

1

Synthesis and Characterization of Compound 1

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All manipulations were carried out using standard Schlenk techniques and vacuum-line manipulations under a protective atmosphere of nitrogen unless otherwise stated. Compound 1 was prepared according to the published procedure [43 (link)]. All other compounds were purchased from commercial sources unless otherwise specified. The solvents were distilled prior to use and were deaerated according to standard procedures [66 ]. The IR spectra were recorded as KBr disks using a Bruker Tensor 27 FTIR spectrophotometer. UV–vis spectra were recorded on a Jasco V-670 UV/vis/near-IR spectrophotometer. Elemental analyses were carried out on a Vario EL elemental analyzer. NMR spectra were recorded on a Bruker AVANCE DPX-200 spectrometer at 300 K. 1H and 13C chemical shifts refer to solvent signals. ESIMS spectra were recorded on a Bruker Daltronics ESQUIRE3000 PLUS spectrometer. Temperature-dependent magnetic susceptibility measurements on powdered solid samples were carried out using a MPMS 7XL SQUID magnetometer (Quantum Design) over a temperature range 2–330 K at an applied magnetic field of 0.1, 0.5, and 1.0 Tesla. The observed susceptibility data were corrected for underlying diamagnetism.
Safety note! Perchlorate salts of transition metal complexes are hazardous and may explode. Only small quantities should be prepared and great care should be taken.
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2

Spectroscopic Characterization of Organic Compounds

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IR spectra were obtained in a Perkin-Elmer infrared spectrometer model 1750. NMR spectra data were recorded on a Bruker FT 300 (Bruker Biospin, Ettlingen, Germany) or on a Varian Inova 500 (Varian, Palo Alto, CA, USA) spectrometer, operating at 300/500 MHz (1H) and 75/125 Hz (13C), respectively, using CDCl3, DMSO-d6, or CD3OD (Deutero GmbH, Kastellaun, Germany) as solvents and TMS (Sigma-Aldrich, Deisenhofen, Germany) as an internal standard. Chemical shifts (δ) are given in ppm, with coupling constants (J) in Hz. HRMS and LRMS spectra were performed, respectively, on a TIMS-Q-TOF Maxis 3G spectrometer and on an Esquire 3000 Plus spectrometer (Bruker Daltonics, Billerica, Massachusetts, USA), operating with electrospray ionization (ESI) in positive or negative modes. Optical rotation was measured in a digital polarimeter JASCO DIP-370 (Na filter, λ = 588 nm). Column chromatography (CC) was performed with Sephadex LH-20 (Sigma-Aldrich), while thin layer chromatography (TLC) separations were carried out on silica gel 60 PF254 (Merck, Darmstadt, Germany). Analytical grade (Labsynth Ltd., São Paulo, Brazil) solvents were used in extraction and chromatographic procedures.
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3

Purification and Characterization of Recombinant CyPJ

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Expression and purification of recombinant human CyPJ protein was carried out as described previously (Chen et al., 2015 (link)). CyPJ protein concentration was determined using the Bradford method. The substrates N-succinyl-Ala-Ala-Pro-Phe-p-nitroanilide (Suc-AAPF-pNA), CsA, 2,2,2-trifluoroethanol, and α-chymotrypsin were purchased from Sigma (St. Louis, MO, United States). The libraries of small molecular compounds used for VS were obtained from SPECS (200,000 compounds)1 and China Natural Products Database (CNPD, 50,000 compounds)2. The small organic compounds selected after VS were purchased from SPECS (Zoetermeer, Netherlands). Chemicals and solvents were either purchased from Sigma or purified by standard techniques. Analytical thin-layer chromatography (TLC) was performed on a Merck pre-coated TLC plate (silica gel 60 F254). Melting points were recorded on an X4-Data microscopic melting point apparatus and were uncorrected. Electrospray ionization-mass spectrometry (ESI-MS) was performed on a Bruker Esquire 3000 plus spectrometer. 1H NMR spectra were recorded on a Bruker Avance 400 spectrometer in CDCl3 using tetramethylsilane (TMS) as the internal standard. Elemental analysis was performed on Carlo-Erba 1106 (Carlo Erba, Italy).
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4

19F NMR and ESI-MS Analysis

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Nuclear magnetic resonance spectra were recorded on a Bruker Avance DRX 300 spectrometer operating at 282 MHz for 19F. Chemical shifts are expressed in parts per million (ppm). The following abbreviations are used: s, singlet; d, doublet; m, multiplet. A Bruker Esquire 3000 plus spectrometer was used for electrospray ionization mass spectrometry (ESI-MS). Elemental analysis was performed using a Flash 2000 Fisher Scientific Thermo Electron analyzer.
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5

Comprehensive NMR and Mass Spectroscopy Analysis

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1 H and 13 C-NMR spectra and DEPT experiments (Supplementary Materials): CDCl 3 solutions at rt using a Bruker-AC-400 spectrometer (Billerica, MA, USA) at 400, 100 and 100 MHz, respectively; 13 C spectra are proton decoupled; chemical shifts in ppm rel to internal SiMe 4 (=0 ppm).
TLC: Merk silica gel 60 F 254 plates (Merck Millipore, Milan, Italy). Column chromatography: silica gel.
Melting points were measured on a Reichert apparatus, equipped with a Reichert microscope, and are uncorrected.
Optical rotations were measured on a Jasco-DIP-181 digital polarimeter (Jasco, Tokyo, Japan).
Mass spectra were recorded on a Bruker ESQUIRE 3000 PLUS spectrometer (Electrospray Ionization (ESI) detector, Billerica, MA, USA or by GC-MS analyses.
GC-MS analyses: HP-6890 gas chromatograph equipped with a 5973 mass detector, using a HP-5MS column (30 m × 0.25 mm, 0.25 µm film thickness; Hewlett Packard, Palo Alto, CA, USA) with the following temp. program: 60 • (1 min), then 6 • /min to 150 • (held 1 min), then 12
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6

Spectroscopic Characterization of Compounds

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Optical rotations were measured on a Perkin-Elmer 241 polarimeter, and UV data were recorded on a Shimadzu Biospec-1601 spectrophotometer. CD spectra were recorded on a JASCO J-815 spectropolarimeter using MeOH as solvent. IR data were recorded using a Nicolet Magna-IR 750 spectrophotometer. 1 H and 13 C NMR data were acquired with Varian Mercury -500 and -600 spectrometer using solvent signals (CDCl 3 ; δ H 7.26/δ C 77.7) as references. The HMQC and HMBC experiments were optimized for 145.0 and 8.0 Hz, respectively. ESIMS data were recorded on a Bruker Esquire 3000 plus spectrometer, and HRESIMS data were obtained using Bruker APEX III 7.0 T and APEX II FT-ICR spectrometers, respectively.
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7

Synthesis and Characterization of Compound a

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All reagents were commercially available and used as supplied without further purification. Compounds a were prepared according to published procedures (Shi et al., 2014 (link)). NMR spectra were recorded with a Bruker Avance DMX 600 spectrophotometer or a Bruker Avance DMX 400 spectrophotometer. Low-resolution electrospray ionization mass spectra were recorded with a Bruker Esquire 3000 Plus spectrometer. High-resolution mass spectrometry experiments were performed with a Waters UPLC H-Class QDA instrument. The melting points were collected on a SGW X-4 automatic melting point apparatus. The determination of the critical aggregation concentration (CAC) values was carried out on a FE38 instrument. Transmission electron microscopy investigations were carried out on a JEM-1200EX instrument. Atomic force microscopy experiments were performed by a Bruker Multi-Mode 8.0 instrument.
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8

Enzyme-Catalyzed Organic Transformations

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All reagents were of the highest purity grade from commercial suppliers: Merck (St Louis, MO, USA) or VWR (Radnor, PA, USA).
Laccase from Trametes versicolor was from Sigma-Aldrich. The enzyme was used based on their respective activities evaluated according to literature assay based on the ABTS (2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid)) as model substrate. [32 (link)]
Biotransformations were performed in a G24 Environmental Incubator New Brunswick Scientific Shaker (Edison, USA) or in a Thermomixer Comfort (Eppendorf, DE).
Reactions were monitored by thin-layer chromatography (TLC) (precoated silica gel 60 F254 plates (Merck, DE)); development with UV lamp, Komarovsky reagent (1 mL 50% ethanolic H2SO4 with 10 mL 2% methanolic 4-hydroxybenzaldehyde), a 20% solution of H2SO4 in ethanol or a molybdate reagent ((NH4)6Mo7O24·4H2O, 42 g; Ce(SO4)2, 2 g; H2SO4 conc., 62 mL; made up to 1 L of deionized water). Flash chromatography: silica gel 60 (70–230 mesh, Merck, DE).
NMR spectra were recorded with a Bruker AC spectrometer (400 or 500 MHz) in [D4]MeOH, [D6]DMSO or [D1]CHCl3. Mass spectra were recorded with a Bruker Esquire 3000 Plus spectrometer.
High-resolution mass spectra (HRMS) were conducted on FT-Orbitrap mass spectrometer in positive electrospray ionization (ESI).
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9

Analytical Techniques for Compound Characterization

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Optical density values were measured on a Jasco V-560 UV–VIS spectrophotometer (JASCO International Co., Ltd., Tokyo, Japan) at a wavelength at 600 nm. Analytical TLC techniques (SiO2, DC-Alufolien Kieselgel 60 F254, Merck, Milan, Italy) were performed with solvent system: hexane–ethyl acetate, 7:3. Visualization was made using a solution of 1% Ce(SO4)2 and 2% phosphomolybdic acid in 10% H2SO4, followed by heating. Preparative column chromatography (SiO2, Kieselgel 60, 230–400 mesh, 40–63 μm, Merck) was performed with the application of hexane–ethyl acetate (7:3) as the eluent. NMR spectra (1H NMR, 13C NMR) were recorded for CDCl3 solutions at RT on a 400 MHz spectrometer (Bruker AC-400, Billerica, MA, USA) and the chemical shift scale was based on internal tetramethylsilane. Mass spectra were recorded on a Bruker ESQUIRE 3000 PLUS spectrometer (ESI detector) (Billerica, MA, USA) or by GC–MS analyses. GC–MS analyses were performed using an HP-5MS column (30 m × 0.25 mm × 0.25 μm, Agilent Technologies Italia Spa, Cernusco sul Naviglio, Italy). The following temperature program was employed: 50 °C/10 °C min−1/250 °C (5 min)/50 °C min−1/300 °C (10 min). The samples for GC–MS were treated with MeOH and trimethylsilyldiazomethane 10% in hexane, to derivatize carboxylic acids by transformation into the respective methyl esters.
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10

Comprehensive Analytical Characterization

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FT-IR spectrometer (Affinity-1, Shimadzu) was used to measure IR spectra. Optical rotations were measured in a polarimeter (MCP 300, Anton Paar) at 25°C. U-2910 spectrometer (Hitachi) was used to record UV spectra. Advance 600 spectrometer (Bruker) was used to measure 1H NMR (600 MHz) and 13C NMR (150 MHz). Esquire 3000 plus spectrometer (Bruker) was used to measure ESIMS spectra. A micro TOF-QII mass spectrometer (Bruker) was used to record HRESIMS data. Sephadex LH-20 gel (Amersham Pharmacia) and silica gel (100–200 mesh and 200–300 mesh; Qingdao Marine Chemicals) were used in column chromatography. Analytical and preparative HPLC was performed on a Shimadzu Prominence system. Circular Dichroism Spectrometer (V100) was used to measure CD spectra.
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