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Ab176642

Manufactured by Abcam

Ab176642 is a laboratory equipment product offered by Abcam. It is designed to perform a specific function, but a detailed and unbiased description of its core function cannot be provided without the risk of extrapolation or interpretation.

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4 protocols using ab176642

1

Quantification of GAPDH in Fusosomes

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Example 45

This assay describes quantification of the level of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) in the fusosomes, and the relative level of GAPDH in the fusosomes compared to the parental cells.

GAPDH is measured in the parental cells and the fusosomes using a standard commercially available ELISA for GAPDH (ab176642, Abcam) per the manufacturer's directions.

Total protein levels are similarly measured via bicinchoninic acid assay as previously described in the same volume of sample used to measure GAPDH. In embodiments, using this assay, the level of GAPDH per total protein in the fusosomes will be <100 ng GAPDH/g total protein. Similarly, in embodiments, the decrease in GAPDH levels relative to total protein from the parental cells to the fusosomes will be greater than a 10% decrease.

In an embodiment, GAPDH content in the preparation in ng GAPDH/g total protein will be less than 500, less than 250, less than 100, less than 50, less than 20, less than 10, less than 5, or less than 1.

In an embodiment, the decrease in GAPDH per total protein in ng/g from the parent cell to the preparation will be more than 1%, more than 2.5%, more than 5%, more than 10%, more than 15%, more than 20%, more than 30%, more than 40%, more than 50%, more than 60%, more than 70%, more than 80%, or more than 90%.

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2

Quantification of GAPDH in Fusosomes

Check if the same lab product or an alternative is used in the 5 most similar protocols

Example 149

This example describes quantification of the level of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) in the fusosomes, and the relative level of GAPDH in the fusosomes compared to the parental cells. Fusosomes were prepared as described in Examples 114 and 154.

GAPDH was measured in the parental cells and the fusosomes using a standard commercially available ELISA for GAPDH (ab176642, Abcam) per the manufacturer's directions. Total protein levels were similarly measured via bicinchoninic acid assay. Measured GAPDH and protein levels are shown in the table below:

[Protein] [GAPDH] GAPDH:Protein
(mg/mL)(ng/mL)(μg/g)
Fusosomes0.8237.245.3
Cells0.4550.4112.0
GAPDH: Total protein ratios are also shown in FIG. 41.

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3

Quantification of Apoptosis Markers

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A total of 5 μg of protein lysates were used to quantify Caspase3 (SEA626Mu, Cloud-Clone Corp.), TNFα (BMS607HS, eBioscience) and cAMP (KGE012B, R&D Systems) using manufacturer's instructions. The plates were measured on a FLUOstar Omega (BMG Labtech) at the recommended wavelength of the manufacturer. All assays were normalised against an ELISA against GAPDH (ab176642, Abcam). GAPDH was not changed in the proteomics and transcriptomics data and was therefore used for data normalisation. Six biological replicates were analysed in duplicates. The mean of each technical triplicate was normalised against the mean of the representative GAPDH technical replicates. Statistical analysis was performed via unpaired Student's t-test and the data are presented as fold-changes with the standard error of the mean (SEM).
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4

Quantifying Alzheimer's Biomarkers in Mouse Brain

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A total of 5 μg of protein lysates were used to quantify total CREB (KHO0231, Invitrogen), p-CREB (Ser133) (KHO0241, Invitrogen), Stathmin1 (E03S0217, Bluegene), Caspase3 (SEA626Mu, Cloud-Clone Corp.), cAMP (KGE012B, R&D Systems) and TNFα (BMS607HS, eBioscience) using enzyme-linked immunosorbent assay (ELISA) after manufacturer's instructions. P-Stathmin1 (Ser16) was quantified by using the Stathmin1 ELISA (E03S0217, Bluegene) and primary antibody against p-Stathmin1 (Ser16) (ab47328, Abcam) and secondary detector antibody (anti-rabbit IgG, HRP-linked) (#7074, Cell Signalling). The plates were measured on a FLUOstar Omega (BMG Labtech) at the recommended wavelength of the manufacturer. All assays were normalised against GAPDH (ab176642, Abcam) as it was not changed in the proteomics and transcriptomics data. Three biological replicates from hippocampus, neocortex, olfactory bulb and brainstem were analyzed in duplicates. The mean of each technical triplicate was normalised against the mean of the representative GAPDH technical replicates. Statistical analysis between APP/PS1 and age-matched wild-type mice was performed via unpaired Student's t-test and data are presented as fold-changes with the standard error of the mean (SEM).
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