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4 protocols using mouse anti dsrna

1

Quantifying Viral Infection by Flow Cytometry

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HeLa cells were mock-infected or infected with either wtVACV, VACV-A24R-R1, or MPXV. Infected cells were either untreated or treated with 45 μM IBT. At 6 hpi, cells were trypsinized and fixed with CytoPerm/Fix kit (BD). Cells were stained with rabbit anti-VACV and mouse anti-dsRNA (Scicons) overnight at 4°C. Cells were washed and stained with anti-rabbit-IgG Pacific Blue (BD) and anti-mouse-IgG 488 (Abcam) for 4°C. Cells were washed, resuspended in FACS buffer (1% FBS, 0.9% sodium azide in PBS) and were analyzed by flow cytometry using a BD LSRFortessa Cell Analyzer. Up to 50,000 total cells were collected and then gated to exclude non-viable cells.
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2

Comprehensive Antibody Protocol

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The following antibodies were used in this study: mouse anti-Flag (F1804; Sigma-Aldrich), mouse anti-dsRNA (10010200; SCICONS), mouse anti-nsp9 (AM08450PU-N; OriGene), mouse anti-mCEACAM1 (MA-29684; Thermo Fisher Scientific), mouse anti-GFP (11814460001; Roche, for immunoblotting), rabbit anti-GFP (ab290; Abcam, for immuno-electron microscopy), mouse anti-LC3 (M152-3; MBL), rabbit anti-VMP1 (12929; Cell Signaling Technology), mouse anti-strep (HX1988; Huaxingbio), rabbit anti-mCherry (GTX59788; Genetex), rabbit anti-TMEM41B (HPA014946; Sigma-Aldrich), mouse anti-GAPDH (60004-1-Ig; Proteintech), mouse anti-BIP (61979; BD Biosciences), mouse anti-Actin (60008-1-Ig; Proteintech), and goat anti-rabbit-gold (10 nm, 25109; Aurion).
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3

SARS-CoV-2 Infection Assay in VeroE6/TMPRSS2 Cells

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VeroE6/TMPRSS2 cells cultured on 96-well plates (Lumos multiwell 96, catalog number 94 6120 096; Sarstedt AG & Co. KG, Germany) were infected with SARS-CoV-2 (WK-521) at an MOI of 0.1 and incubated for 5 h. Next, the cells were fixed for 30 min at 4°C with 4% paraformaldehyde in phosphate-buffered saline (PBS). After washing once with PBS, the cells were permeabilized for 15 min at room temperature (RT) with PBS containing 0.1% Tween 20. The cells were then incubated with a mixture of rabbit anti-SARS-nsp4 (1:500) (catalog number ab181620; Abcam, USA) and mouse anti-dsRNA (1:1,000) (catalog number J2-1709; Scicons, Hungary) antibodies for 1 h at RT, washed three times with PBS, and incubated for 1 h at RT with a mixture of Alexa Fluor 594-conjugated anti-rabbit IgG (1:500) (catalog number A11012; Thermo Fisher) and Alexa Fluor 488-conjugated anti-mouse IgG (1:500) (catalog number A10680; Thermo Fisher). Next, the cells were washed three times with PBS, and cell nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (1:5,000) (catalog number D1306; Thermo Fisher). Cells were observed under an inverted fluorescence phase-contrast microscope (catalog number BZ-X810; Keyence, Japan).
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4

Antibody-based Detection of Viral Proteins

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The following primary antibodies were used: PRRSV N protein antibody (JNT, China; no. JN0401), mouse anti-glyceraldehyde-3-phosphate dehydrogenase (anti-GAPDH) antibody (TransGen Biotech, China; no. HC301), rabbit anti-HA (Cell Signaling Technology, USA; no. 3724 T), rabbit anti-Flag (Abmart, China; no. T20008M), mouse anti-HA (Abmart; no. M20003M), mouse anti-Flag (Beyotime, China; no. AF519), rabbit anti-GFP (Proteintech; no. 50430-2-AP), mouse anti-GFP (Proteintech; no. 66002-Ig), rabbit anti-β-actin (Proteintech; no. 81115-1-RR) and mouse anti-dsRNA (Scicons, Hungary; no. 10010500). The anti-ZNF283 antibody was generated by immunizing rabbits with bacterially expressed full-length porcine ZNF283.
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