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10 protocols using masshunter qualitative analysis 10

1

Quantitative HPLC Analysis of Levofloxacin

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The high‐performance liquid chromatography (HPLC) system consisted of an Agilent 1200 series degasser (G1322A), quaternary pump (G1312B), autosampler (G1367D), column oven (G1316B), and DAD detector (G1315C). The Agilent MassHunter Workstation software was used for instrument control and data acquisition. Chromatogram review and peak area integration were performed using Agilent MassHunter Qualitative Analysis 10.0 software. The chromatographic separation was performed using a Waters Sunfire C18 HPLC column (5 μm particle size, 150 mm × 4.6 mm, Walters). The column temperature was set at 35°C, and the detection wavelength was 294 nm. Optima retention of levofloxacin was achieved using an isocratic mobile phase of methanol: water containing 0.06% phosphoric acid in the ratio of 17:83 (v/v). Chromatographic separation was performed using a flow rate of 1.0 ml/min. The injection volume was 15 μl.
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2

LC-MS Analysis of Small Molecules

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The samples for LC–MS analysis were prepared in 2-mL glass vials and 0.5-µL sample volume was injected into an Agilent 6546 QTOF Mass Spectrometry system, equipped with an Agilent 1260 Infinity Prime II LC installed with a Zorbax Eclipse Plus C18 RRHD column (2.1 × 50 mm × 1.8 µm). The mobile phase consisted of 65% acetonitrile and 35% water with 0.1% trifluoracetic acid pumped at a flow rate of 0.5 mL/min. MS acquisition was carried out with an AJS (Agilent Jet Stream) ESI source equipped in Agilent 6546 system. The MS analysis was carried out in the negative mode with the following source conditions: drying gas temp 150 °C at 8 L/min, sheath gas 150 °C at 11 L/min, capillary voltage 4000 V, nozzle voltage 2000 V, and fragmentor voltage 100 V. The data analysis of extracted ion chromatograms (EICs) and their corresponding MS spectra was carried out using Agilent MassHunter Qualitative Analysis 10.0 software. MS data were searched via compound matching using the Agilent FBF (find-by-formula) algorithm, matching for singly charged monomeric ion species for common ions such as [M-H]-.
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3

Fatty Acid Composition and Nutritional Indices

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The acquired data were analyzed using Agilent MassHunter Qualitative Analysis 10.0 software. The identification of FA was carried out by the retention time and comparison of the MS spectrum with the NIST chemical database library and confirmed with the literature reports [119 ]. Five independent replicates were injected. The atherogenic (AI), thrombogenic (TI) and hypocholesterolemic/hypercholesterolemic indexes (h/H) were calculated using the following formula (Equations (1)–(3)), as proposed by Ulbricht and Southgate [120 (link)]: AI=[C12:0+4] × [C14:0+C16:0][MUFA+n  6+(n  3)]
TTI=[C14:0+C16:0+C18:0][0.5×MUFA+0.5×n  6+3×n 3+((n  6)(n 3))]
h/H=[C18:1(ω9)+18:2(ω6)+18:3(ω3)+C20:4(ω6)+C20:5(ω3)][C14:0+C16:0]
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4

HPLC-MS Analysis of Compounds

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HPLC-MS analyses were performed by an Agilent 1200 Series HPLC system coupled to an Agilent 6520A qTOF-MS equipped with an electrospray ionization (ESI) probe (Agilent Technologies, Santa Clara, CA, USA). For the separation, a Zorbax Eclipse XDB-C18 Solvent Saver Plus reversed-phase column (75 × 3.0 mm i.d.; 3.5 µm; Agilent Technologies, Santa Clara, CA, USA) was employed. The mobile phase consisted of water with 0.1% formic acid and 5% acetonitrile (A) and acetonitrile with 0.1% formic acid and 5% water (B). The elution was carried out at 25 °C with a flow rate of 0.5 mL/min using the following linear gradient: 0–100% B (0–10 min), 100% B (10–12 min), and 0% B (12–15 min). The injection volume was 1 µL. Analytes were detected using drying gas (nitrogen) at 350 °C and 12 L/min and nebulizer gas at 40 psi. For collision-induced dissociation (CID), the parameters were as follows: collision gas: high-purity nitrogen; collision energy: 10–40 eV; fragmentor voltage: 110 V; capillary voltage: 3500 V. MS and MS/MS spectra were acquired in the m/z range of 25–700 and 45–600, respectively. Reference masses of m/z 121.050873 and 922.009798 for positive and m/z 112.985587 and 1033.988109 for negative ionization were applied in the internal calibration. The collected data were evaluated with MassHunter Qualitative Analysis 10.0 software (Agilent Technologies, Santa Clara, CA, USA).
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5

UHPLC-Q-TOF MS Analysis Protocol

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Analysis was performed on an Agilent 1290 series UHPLC system coupled with an Agilent 6550 Q-TOF MS equipped with an electrospray ionization (ESI) source from Agilent Technologies (Palo Alto, CA, USA). The LC method used here was the same as that given above. Half of the sample solution was split into the MS detector with a total injection volume of 10 μL. The parameters of MS were set as follows: drying gas temperature (250 °C, 12 L/min), nebulizer pressure (0.18 MPa), sheath gas temperature (350 °C, 11 L/min), capillary voltage (4.0 kV), nozzle voltage (500 V), and fragmentor voltage (160 V). MS data were collected in the m/z range of 100–3000. Mass Hunter PCDL Manager B.08.00 software and Mass Hunter Qualitative Analysis 10.0 software (Agilent Technologies) were used in the analysis.
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6

Liquid Chromatography-Mass Spectrometry Drug Analysis

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Analysis was performed using liquid chromatography tandem quadrupole time of flight mass spectrometry (LC/Q-TOF) as described previously (33 (link)). Samples were analyzed on an Agilent Technologies 1,290 Infinity UHPLC with AJS-ESI 6,545 QTOF with a run time of 48 s, using data dependent acquisition (DDA) for data collection.
Agilent MassHunter Qualitative Analysis 10.0 software was used for data analysis. Retention time (RT, minutes), database scores (DBS), and library search scores (LSS) were used to determine positivity for all drugs in the scope based on validated criteria established during method development (33 (link)). A sample was considered positive if it met or exceeded the established criteria for RT, DBS, and LSS. Any results that met or exceeded the LSS, but did not meet RT or DBS criteria were manually reviewed for positivity. Results which did not meet these criteria were reported as none detected.
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7

Metabolite Profiling by LC-MS

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The experiments relied on a liquid chromatograph mass spectrometer
(Agilent G-6530) for metabolite identification. The instrument is
equipped with a C18 chromatographic column (100 mm × 2.7 μm
× 3.0 mm). The column oven was maintained at 35 °C. The
flow rate was 0.4 mL/min, and the mobile phase consisted of solvent
A (water, 0.1% formic acid) and solvent B (Acetonitrile, 0.1% formic
acid). Gradient elution conditions were set as follows: 0–0.5
min, 5% B; 0.5–7 min, 5 to 100% B; 7–8 min, 100% B;
8–8.1 min, 100 to 5% B; 8.1–10 min, 5%B.
Rely
on Agilent MassHunter Qualitative Analysis 10.0 for peak extraction
and filtering, sample retention time alignment, addition ion merging,
and missing value filling of raw data. Metabolite annotation was done
by comparison to the METLIN database.
Metabolites with a frequency
of occurrence greater than 50% in
all samples and greater than 66.6% in the same samples were labeled
as significant metabolites. Further, univariate analysis of variance
multiplicity (fold change) and T.TEST algorithm statistical tests
were used, BH correction was performed to obtain q-value, and metabolites with p-value less than 0.05
and log 2 (fold change) greater than 2 were labeled as significantly
differentiated metabolites.
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8

Advancing Mass Spectrometry Analysis

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MassHunter Qualitative
Analysis 10.0 and IM-MS Browser 10.0 (Agilent Technologies) were used
for evaluation of the QTOFMS and IM-QTOFMS data, respectively. The
measured accurate masses are tabulated in Tables S3 and S4 (Supporting Information).
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9

GC-QTOF Analysis of Chemical Samples

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A glass microvial containing 3 mg of sample was placed inside the TSP attached to an Agilent 7890B gas chromatograph equipped with a Restek Rxi-5 ms column (30 m × 320 μm × 0.25 μm). The mass spectrometer was an Agilent 7250 GC/Q‑TOF equipped with a low-energy-capable EI source (70 eV). The TSP was set at 300 °C and the oven temperature set at 40 °C for one minute, increasing by 20 °C/minute until 320 °C where it was held for five minutes. Helium was used as a carrier gas, at 1.43L/min flow rate and 8.7psi pressure. The equilibration time was 0.5 min and the sample injection was splitless. The mass range was 50 to 650 m/z. All samples were run in triplicate with blanks added between samples. Data analysis was performed using Agilent Mass Hunter Qualitative Analysis 10.0 with compound assignments using NIST Library 17. Only compounds with a match factor (MF) and reverse match factor (RMF) > 700 and where the molecular ion is present with an accuracy mass error below 50 ppm were shortlisted.
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10

Mass Spectrometry Data Analysis

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Mass Hunter Qualitative Analysis 10.0 (Agilent, Santa Clara, CA, USA) analysis was used to complete and process the chromatographic data. MS Excel 2016 with the Data Analysis add-on was used for statistical analysis and for regression calculation (Microsoft, Redmond, WA, USA). Linear regression parameters for the standard curve were determined using ANOVA. The IC50 and standard deviation values were calculated using GraphPad Prism 9 software (GraphPad Software, San Diego, CA, USA).
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