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Accupower 2x greenstar qpcr master mix

Manufactured by Bioneer
Sourced in United States, Germany, Australia

AccuPower 2X GreenStar qPCR Master Mix is a ready-to-use solution for quantitative real-time PCR (qPCR) experiments. It contains all the necessary components, including a DNA polymerase, dNTPs, buffer, and a green fluorescent dye for real-time detection of PCR amplification.

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107 protocols using accupower 2x greenstar qpcr master mix

1

Flavonoids Modulate Inflammatory Responses

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RAW 264.7 cells (6 × 105 cells/well) were plated in six-well plates and then stimulated with or without LPS (1 μg/mL) for 1 h. After one hour, the cells were treated with flavonoids (2.5 or 5 µg/mL) and kept for 24 h at 37 °C. Total RNA was extracted by the Trizol reagent (Thermo Fisher Scientific, Inc., Waltham, MA, USA), and the quality of the RNA was confirmed on 1.5% agarose gel by studying the extent to which RNA bands were intact, and the quantification of the RNA was done by the Biospectrometer (Eppendorf, Germany). RNA was converted into cDNA by iScript™ cDNA synthesis kit (Biorad Laboratories, Inc., Hercules, CA, USA) following the user guidelines. Then, cDNA was diluted 10-fold and used as the template for qRT-PCR analysis. Total of 20 μL of PCR mix comprising cDNA (2 μL), primer (1.5 μL), 10 μL of AccuPower® 2X GreenstarTM qPCR Master mix (Bioneer, Daejeon, South Korea), and ddH2O (6.5 μL) was used. All reactions were performed in 96-well plates using Bio-Rad CFX 96 (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The primer sequences for TNFα, IL-1β, and β-actin were obtained from Kim et al. [42 (link)]. β-actin was used as an internal control to normalize, and transcripts changes were measured using the 2−ΔΔCT method. The experiment was performed in triplicate.
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2

Quantifying Gene Expression in HT-22 Cells

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HT-22 cells were seeded in 6-well plates. The cells were treated with TLE for 12 h before harvest. Total RNA was extracted by Trizol reagent and RNA concentration was measured using a Nanodrop spectrometer (Thermo Scientific, Rockford, IL, USA). RNA was converted to complementary DNA (cDNA) by reverse transcription using AccuPower RT Premix kit (Bioneer, South Korea). The cDNA was used as a sample for the real-time PCR step. Real-time PCR assay was performed using AccuPower 2X GreenStarTM qPCR Master Mix (Bioneer, South Korea) in ExicyclerTM 96 (Bioneer, Daejeon, South Korea) using gene-specific primers (Table 1) [22 (link),23 (link)]. The mRNA expression level was calculated by the delta-delta Ct method with β-actin as an internal control.
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3

Adipogenesis Assay with 3T3-L1 Cells

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The 3T3-L1 cells were obtained from the American Type Culture Collection (Manassas, VA, USA). Dulbecco’s modified Eagle’s medium (DMEM), glutamine, penicillin-streptomycin, fetal bovine serum (FBS), bovine calf serum (BCS), and TRIzol reagent were obtained from Invitrogen (Carlsbad, CA, USA). The cell count kit-8 (CCK-8) was purchased from Dojindo Laboratories (Kumamoto, Japan). An assay kit for TG was obtained from Asan Pharmaceutical Co. (Seoul, Korea). The GPDH activity assay kit was procured from Takara (Kyoto, Japan). The bicinchoninic acid (BCA) protein assay kit was obtained from Thermo Scientific (Pittsburgh, PA, USA). The Puregene DNA isolation kit was purchased from Qiagen (Chatsworth, CA, USA). M-MLV reverse transcriptase and AccuPower® 2X GreenStarTM qPCR Master Mix were purchased from Bioneer (Daejeon, Korea). The AMPK Kinase Assay kit was purchased from Cyclex (Nagano, Japan) and Isorhamnetin was obtained from Sigma Co. (St Louis, MO, USA)
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4

Quantifying Gene Expression in Diabetic Kidney

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Total RNA from the renal tissues of WT and db/db mice was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). Total RNA (1.5 µg) was reverse-transcribed to cDNA using a Revert-Aid First Strand cDNA Synthesis kit (AccuPower® RT PreMix, Bioneer, Republic of Korea) following the manufacturer’s protocol. Primers were obtained from Cosmo Genetech (Seoul, Republic of Korea). Their sequences are presented in Table 1. AccuPower® 2X GreenStarTM qPCR Master Mix (Bioneer, Daejeon, Republic of Korea) was used to perform real-time PCR with reactions prepared according to the manufacturer’s protocol. All reactions were performed in triplicates. The cDNA was amplified in 45 cycles using the following settings: 15 s at 95 °C, 30 s at 57 °C, and 30 s at 72 °C. Analysis was performed using CFX Manager™ software (Bio-Rad, Hercules, CA, USA) and Microsoft Excel. Relative RNA levels were normalized to those of β-actin.
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5

Quantitative Analysis of Gene Expression

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Total RNA was extracted from various cells using TRIzol® Reagent (Life Technologies, Carlsbad, USA) according to the manufacturer’s protocols, and RNA concentrations were measured absorbance at 260 nm using by Thermo Fisher Scientific, Waltham, MA, USA. The cDNA synthesis was conducted using RevertAid First Strand cDNA Synthesis Kit (Thermo Scientific). Real-time PCR was performed using a LightCycler®96 system (Roche, Basel, Switzerland). To determine quantitative sybergreen real-time PCR, amplification was conducted with Accupower® 2x GreenstarTM qPCR-MasterMix (Bioneer, Deajeon, Korea). Primer sequence were as follows: human TGase 2 forward: 5′-AGA ATC CAG AAA TCA AGA TCC GG-3′ and reverse: 5′-CTC CAC AGT GAA GGT GCA G, p53 forward: 5′-CTT TGA GGT GCG TGT TTG TG-3′ and reverse: 5′-CCC TTT CTT GCG GAG ATT CT-3′, LC3 forward: 5′-AGC ACA GCA TGG TGA GTG-3′ and reverse: 5′-GTA GAC CAT ATA GAG GAA GCC G-3′, actin forward: 5′-CAA GCA GGA GTA TGA CGA GTC-3′ and reverse: 5′-TGT CAA GAA AGG GTG TAA CGC-3′.
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6

Quantifying Gene Expression in Blood and Cell Cultures

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Total RNA from whole blood was isolated using Tempus Spin RNA Isolation Kit (Tempus), while total RNA from cell culture pellets was isolated using RNeasy Mini Kit (Qiagen) following the manufacturer’s instructions. Reverse transcription of 1 μg total RNA was done by using ImProm-II Reverse Transcription System (Promega). Quantitative real-time PCR was performed by using Rotor gene 3000, with AccuPower 2X GreenstarTM qPCR Master Mix (Bioneer). GADPH was used as internal reference gene67 (link). HO-1 amplicons were detected by using forward primer 5′-GCAGAGAATGCTGAGTTCATG-3′ and reverse primer 5′-CACATCTATGTGGCCCTGGAGGAGG-368 (link). All assays were performed in duplicate and the results were shown as cycle threshold (Ct).
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7

Oxidative Stress and Mitochondrial Dynamics

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The analytical-grade reagents used in the extraction process were purchased from RCI Labscan (Bangkok, Thailand). The 2,7-dihydrofluorescein diacetate (H2DCF-DA) was obtained from Thermo Scientific (Waltham, MA, USA). Dulbecco’s modified Eagle medium (DMEM), sodium selenite, chloroquine, 4′,6-diamidino-2-phenylindole (DAPI) and L-glutamic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). The 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) was obtained from Biobasic (Markham, ON, Canada). CytoTox 96 ® Non-Radioactive Cytotoxicity assay was purchased from Promega (Madison, WI, USA). Alexa Fluor 488, carbonyl cyanide m-chlorophenylhydrazone (CCCP), mouse monoclonal anti-β-actin antibody, mouse monoclonal anti-rabbit IgG, HRP-linked antibody, rabbit polyclonal anti-LC3B antibody, rabbit monoclonal anti-TOM20 (D8T4N) antibody and tetramethylrhodamine ethyl ester (TMRE) were purchased from Cell Signaling Technology (Denvers, MA, USA). All primers, the AccuPower® RT Premix kit and AccuPower® 2X GreenStarTM qPCR Master Mix were purchased from Bioneer (Daejeon, South Korea). Mitotracker Red CMXRos was obtained from Molecular Probes (Eugene, OR, USA).
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8

Quantitative Analysis of mRNA Expression

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For mRNA expression, RAW264.7 cells were grown at a density of 5 × 104 cells/well in a 6-well plate and then subjected to pre-treatment for 1 h at 37 °C of with and without LPS (1 μg/mL; Sigma-Aldrich) and PUG treatment with 4 and 6 μM for 24 h at 37 °C. The total RNA was extracted by Trizol® (Thermo Fisher Scientific, Inc.) reagent after treatment. The iScriptTM cDNA synthesis kit (BioRad Laboratories, Inc., Hercules, CA, USA) was used to convert isolated total RNA (1 μg) to cDNA rendering to the company’s instructions. The converted cDNA was then used to perform qPCR using the AccuPower® 2X GreenstarTM qPCR Master mix (Bioneer Corporation), with the following reaction conditions: Pre-denaturation for 2 min at 95 °C, followed by 40 cycles of denaturation and annealing/extension at 95 °C for 5 s, at 58 °C for 30 s, respectively, in the CFX384 Real-Time PCR Detection System (BioRad Laboratories, Inc.). The qRT-PCR primers used for this study are given in Table 1.
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9

Plasma miRNA Expression Profiling

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The expression levels of miR-23a-3p, miR-101-3p and miR-let-7c in plasma samples of all studied subjects were evaluated by qPCR procedure. The qPCR assays were performed in triplicate for all specimens using Syber Green-I dye in AccuPower® 2X GreenStarTM qPCR Master Mix (Bioneer Inc., Seoul, South Korea) and miRNA-speci c primers according to the manufacturer's protocol, on the StepOnePlus™ Real-Time PCR System (Applied Biosystems, Foster City, USA). In a total volume of 25µl, 100 ng cDNA was mixed with 12.5 µL of 2X SYBR Green PCR master mix (Bioneer Inc., Seoul, South Korea) and 10 pmol of each primer pairs for miR-23a-3p, miR-101-3p and miR-let-7c and housekeeping gene U6 small nuclear RNA (snRNA). Thermal cycling program consisted of initial denaturation step at 95°C for 30 s, followed by 40 cycles at 94°C for 5 s, 60°C for 1 min. In order to normalize the variability of miR-23a-3p, miR-101-3p and miR-let-7c expressions, we evaluated the expression level of the housekeeping gene U6 snRNA, as an internal control. The no template control (NTC) was also used as a negative control to monitor contamination. The relative changes in expression levels of miR-23a-3p, miR-101-3p and miR-let-7c were calculated using the comparative 2 -ΔΔCT method.
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10

Real-Time PCR Gene Expression Analysis

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Real-time PCR primers were designed using NCBI-Primer BLAST (https://www.ncbi.nlm.nih.gov/tools/primer-blast/) and obtained from Bioneer. The qPCR was performed using AccuPower 2X GreenStarTM qPCR master Mix (Bioneer, Daejeon, Republic of Korea). The PCR amplification was carried out as followed: initial denaturation at 95 °C for 3 min, followed by 40 repetitive cycles at 95 °C for 10 s, 60 °C for 30 s, and 72 °C 30 s. GAPDH, 18 s, RPLP0 were used as a reference for all PCR reactions. The calculation for relative gene expression level was based on GAPDH, 18 s, RPLP0 expression by ∆∆Cq with Bio-Rad CFX Manager 3.1 software (Bio-Rad, Seoul, Republic of Korea). The primer sequences are listed in (Table 1).
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