The largest database of trusted experimental protocols

Direct red 80

Manufactured by Merck Group
Sourced in United States, Germany, Japan, United Kingdom, China, France, Italy, Netherlands, Canada

Direct Red 80 is a synthetic dye commonly used in laboratory settings. It is a water-soluble, red-colored azo dye that is utilized in various applications, such as staining and coloring procedures. The core function of Direct Red 80 is to provide a consistent and reliable coloring agent for specific laboratory techniques and processes. Further details on its intended use are not available.

Automatically generated - may contain errors

286 protocols using direct red 80

1

Sirius Red Staining of Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Sirius red solution was composed of 1% Direct Red 80 (MilliporeSigma; 365548) in 1.3% picric acid. TA sections were fixed with acetone, prechilled at −20°C, for 10 min. The sectionns were then washed in deionized water for 1 min, stained with Sirius red for 15 min, and rinsed with 0.5% acetic acid for 1 min. The sections were subsequently washed with 100% ethanol for 2 min and twice with xylene for 10 min. Finally, the sections were mounted with Permount for taking images as described for H&E staining. Quantification of Sirius red+ fibrosis was done using the entire section area with Fiji (Shimizu-Motohashi et al., 2015 (link)).
+ Open protocol
+ Expand
2

Histological and Collagen Assessment of Spinal Tails

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tails allocated for histology (0 weeks n = 2, 2 weeks n = 6, 4 weeks n = 6, and 6 weeks n = 4) were chemically fixed in 10% neutral buffered formalin at 4°C for 48 hours. Fixed tissues were cryopreserved by immersion in 30% sucrose overnight at 4°C followed by embedding in Tissue‐Tek optimal cutting temperature (OCT) medium at −80°C. Mid‐sagittal cryosections 10 μm thick were stained with Harris hematoxylin and eosin (H&E) to visualize overall tissue architecture. The Masuda grading system was used by two evaluators, blinded to sample identity, to quantify the grade of degeneration for each stained disc.14PicroSirius Red (PSR) staining was performed on tails allocated to AFM after all imaging was complete (n = 1 per group for PSR staining). 10 μm thick tissue sections were equilibrated in PBS for 5 minutes and then chemically fixed with 4% paraformaldehyde (28 908; Fisher Scientific) in PBS for 10 minutes. From this point, PSR staining was performed as described by others15, 16 using Direct Red 80 (365 548; Millipore Sigma, Burlington, Massachusetts) dissolved into a saturated aqueous picric acid solution. Samples were viewed under linearly polarized light (Nikon eclipse 50i; Nikon, Edgewood, New York).
+ Open protocol
+ Expand
3

Histological Assessment of Liver Injury

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin sections of liver tissue (5 μm) were stained with H&E to evaluate areas of necrosis. After deparaffinization, sections were immunostained with antibodies against F4/80 (ab6640), CK19 (ab52625, Abcam), or Gr-1 (LS-C112469, Lifespan Bioscience). Apoptosis in the liver was determined by TUNEL staining using a kit (Promega). Sirius red staining was performed on paraffin sections using saturated picric acid containing 0.1% DirectRed 80 (MilliporeSigma). Stained areas were quantified by iSolution DT 36 software (Carl Zeiss), and results were expressed as a percentage of area.
+ Open protocol
+ Expand
4

Histological Assessment of Liver Fibrosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Formalin-fixed liver samples were paraffin embedded, sectioned, and stained with hematoxylin and eosin (H&E) or Gömöri trichrome at the Connecticut Veterinary Medical Diagnostic Laboratory (CVMLD), the University of Connecticut. Also, paraffin-embedded liver sections were subjected to Picrosirius red staining. Slides were first deparaffinized and rehydrated by immersion in xylene twice for 5 min, followed by 100% ethanol twice for 5 min. The slides were then immersed through graded ethanol (95%, 70%, 50%) for 5 min each and finally in water for 5 min. Subsequently, the slides were stained with Weigert’s iron hematoxylin (Electron Microscopy Sciences, Hatfield, PA) for 8 min and then washed with water for 10 min, after which they were stained with picrosirius red staining solution (0.1% (w/v) Direct red 80 (MilliporeSigma) in saturated aqueous picric acid (Ricca Chemicals, Arlington, TX)) for 2 h. Slides were then washed with acidified water for 1 min and then twice with 100% ethanol for 5 min. After washing the slides with xylene for 5 min, the stained sections were covered with a coverslip using a DPX mountant (MilliporeSigma), air-dried, and imaged. Picrosirius red positive area was then calculated using Image J image analysis software. All stained images were captured with a 10X objective using the Zeiss Axio Vert A1 (Oberkochen, Germany) equipped with an MRc camera.
+ Open protocol
+ Expand
5

Quantifying Adipose Collagen Content

Check if the same lab product or an alternative is used in the 5 most similar protocols
The acid -soluble collagen content from the different adipose depots were measured using a sirius red dye binding assay following the protocol described before (Coentro, Capella-Monsonis, Graceffa et al., 2017 (link)). Briefly, the acid-soluble collagen was extracted from 100 mg adipose tissues by homogenization and incubation with 0.5 M acetic acid for 48 h at 4o C. The soluble collagen was obtained by centrifugation and incubated with 1 mL 0.1% Direct Red 80 (Millipore Sigma) in saturated picric acid dye reagent solution for 1 h at room temperature. The collagen–dye complex was precipitated by centrifugation at 10,000 g for 10 min, and the supernatant was removed. The resulting pellets were dissolved in 1 mL 0.5 M sodium hydroxide, and the relative absorbance was measured in a 96-well plate at 540 nm using a microplate reader (Molecular Devices SpectraMax, San Jose, CA). Collagen content was normalized to total protein content determined as described before (Puttabyatappa et al., 2017 ). The inter and intra-assay coefficients of variance for Sircol assay was 1.43 ± 0.32 and 1.71 ± 0.94. The measurable range for this assay is 31.25 to 500 μg/mL.
+ Open protocol
+ Expand
6

Histochemical Analysis of Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sodium hypochlorite solution (concentration: available chloride 10–15%, 425044), acetic acid (concentration≥99.7%, 320099), Direct red 80 (Sirius red, powder, dye content 25%, 365548), ferric chloride (powder, F-7134), picric acid solution (1.3% in H2O, saturated, P6744) and hematoxylin (powder, H9627) were purchased from Sigma-Aldrich (MO, USA). Ethylenediaminetetraacetic acid (powder, 99%, A10713) was obtained from Alfa Aesar (MA, USA). Paraffin (melting point 56–57°C, 22900700) was acquired from Fisher Scientific (PA,USA). Ethyl alcohol (absolute, anhydrous, 111000200) was purchased from Pharmco (USA), and hydrochloric acid (concentration 36.5–38%) was obtained from VWR Chemicals BDH (USA).
+ Open protocol
+ Expand
7

Histological and Immunofluorescence Analysis of Cardiac Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Histology and immunofluorescence staining were performed as described58 (link). Hearts were excised, rinsed in cold PBS and fixed in 4% paraformaldehyde/PBS (Sigma Aldrich) for 24–48 hours. The tissue was subsequently dehydrated through an increasing ethanol series, cleared in toluol and embedded in paraffin. 5 µm paraffin sections were stained with hematoxylin & eosin (Carl Roth) to assess overall cardiac morphology or with Sirius Red (Direct Red 80, Sigma Aldrich) to visualize myocardial fibrosis.
For immunofluorescence staining paraffin sections were deparaffinized, rehydrated and heat mediated antigen retrieval was performed in sodium citrate buffer (10 mM, pH 6.0) for 20 minutes. After blocking in antibody solution containing 5% normal goat serum (Jackson ImmunoResearch) for 1 hour, sections were incubated over night with primary antibodies at 4 °C. Secondary antibody detection was performed at room temperature for 1 hour using Alexa Fluor 488 or 555 conjugated secondary antibodies (Life Technologies, 1:500). Nuclei were stained with DAPI or TO-PRO-3 (Life Technologies) and sections were mounted in ProLong Gold antifade reagent (Life Technologies).
+ Open protocol
+ Expand
8

Quantification of Preosteoblast Collagen Secretion

Check if the same lab product or an alternative is used in the 5 most similar protocols
The measurement of total collagen levels secreted by preosteoblastic cells in the culture medium was conducted using the Sirius Red dye assay (Direct red 80, Sigma-Aldrich, St. Louis, MO, USA). Supernatants were collected every 3 days, up to day 21, and 25 µL of each was diluted in deionized water (dd H2O) to a total volume of 100 µL, mixed with 1 mL of 0.1% Sirius Red dye, and left to incubate for 30 min at room temperature. Following centrifugation of the samples at 15,000× g for 15 min, the resulting pellets were rinsed with 0.1 N HCl to eliminate any unbound dye. Subsequently, the samples were centrifuged at 15,000× g for 15 min and dissolved in 500 µL of 0.5 N NaOH. The absorbance was measured using a Synergy HTX plate reader at 530 nm. The absorbance measurements were correlated with a calibration curve of collagen type I concentrations. Experiments were performed for n = 6.
+ Open protocol
+ Expand
9

Picrosirius Red Staining for Collagen

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dried sections on charged glass were deparaffinized and rehydrated thorough xylene and graded alcohols into tap water. Rehydrated sections were submerged in a 0.1% solution of Picrosirius Red composed of Direct Red 80 (#365548; Sigma‐Aldrich) in a saturated aqueous solution of picric acid (#P6744; Sigma‐Aldrich) for 1 h at RT to achieve stain saturation. Slides were washed twice in acidified water (0.5% glacial acetic acid in distilled water) for 2 min each. Slides were dehydrated through an abbreviated 90% and absolute ethanol series, further dehydrated in xylene and mounted in CytoSeal XYL (Richard‐Allan/Thermo Fisher Scientific). Brightfield images were collected on an Olympus BX43 upright microscope equipped with an Olympus DP74 CMOS camera operated by cellSens Standard software (Olympus Corporation).
+ Open protocol
+ Expand
10

Histological Analysis of Tissue Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples were fixed overnight in 4% PFA, rinsed in 1x phosphate-buffered saline (PBS). Post-embryonic samples were decalcified in Osteosoft (Merck, 1017281000). Samples were dehydrated before paraffin embedding and sectioned at 7 μm. For hematoxylin/eosin/alcian blue staining, sections were initially treated in a solution of 1% Alcian blue in 3% acetic acid before classical hematoxylin/eosin staining. For ‘critical electrolyte concentration’ applications (Scott and Dorling, 1965 (link)), the initial treatment was replaced by 0.05% alcian blue and 0.6M MgCl2 in 0.2M acetate buffer. Sirius Red staining were performed in 0.1% Direct Red 80 (Sigma, 365548) in 1.2% picric acid and rinsed in 0.5% acetic acid. Elastic staining was performed following the manufacturer’s instructions (elastic stain kit, Sigma HT25A-1KT). Images were acquired with a Pannoramic MIDI Slide scanner (3D HISTECH, Budapest, Hungary). Polarised images were taken with a Leica DM5500 microscope.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!