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31 protocols using anti drp1

1

Immunofluorescence Analysis of ATPB, Drp1, and p62

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BMDMs were washed twice, fixed by 4% cold paraformaldehyde for 30 min, permeabilized by 0.5% Triton X‐100 for 10 min, blocked by goat serum for 1 h, and incubated with anti‐ATPB (1:100, Abcam) overnight at 4°C. On the second day, BMDMs were stained with Goat anti‐mouse IgG H&L (Alexa Flour® 488, Abcam) for 1 h, followed by a second block and primary incubation (anti‐dynamic‐related protein 1 (anti‐Drp1), 1:250, Abcam; anti‐SQSTM1/p62, 1 μg/mL, Abcam). On the third day, a secondary antibody (Alexa Flour® 555, Abcam) was added to incubate with cells for 1 h. DAPI was used to stain the nucleus. Slides and stained cells were observed and photographed by a confocal microscope.
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2

Western Blot Analysis of Neurodegeneration

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Whole protein lysates were prepared using the PRO-PREP protein extraction solution (Intron Biotechnology, Seongnam, Korea), and mitochondrial and cytoplasmic fractions were performed with a mitochondria isolation kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of proteins were separated by electrophoresis on 8–12% SDS-PAGE gels and transferred onto nitrocellulose membranes (BD Biosciences, San Jose, NJ, USA). The membranes were blocked by incubation in blocking buffer (BD Biosciences) and probed with the following antibodies overnight at 4°C: anti-NeuN, anti-AT8, anti-Tau-5, anti-β-actin (Sigma–Adrich, St. Louis, MO, USA), anti-PSD95, anti-phospho(p)-Tau(T181), anti-p-Tau(S396; Abcam, MA, USA), anti-Drp1, anti-p-Drp1(S616), anti-COXIV, anti-GAPDH, anti-PARP, anti-cleaved caspase-3, p-Tau(S262), anti-CDK5, anti-ERK, anti-p-ERK, anti-GSK3β, anti-p-GSK3β(S9; Cell Signaling, MA, USA), and anti-p35 (Thermo Fisher Scientific, Waltham, MA, USA). The membranes were washed with TBS with 0.1% Tween-20 (TBST) and incubated with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling) for 1 h at room temperature. After washing with TBST, specific binding was detected using a chemiluminescence detection system (Thermo Fisher Scientific, Waltham, MA, USA).
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3

Antibody Sources for Cell Biology

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Antibodies used in this study were purchased as follows: anti-actin, anti-phospho-Drp1 Ser637 (Cell Signaling, Danvers, MA), anti-amyloid precursor protein, anti-glucose-regulated protein of 94 kDA (GRP94), anti-α tubulin, anti-receptor-interacting protein kinase (RIPK) (EMD-Millipore, Billerica, MA), anti-immunoglobulin-binding protein/glucose-regulated protein of 78 kDA (BiP/GRP78) (BD Biosciences, Franklin Lakes, NJ), anti-BiP/GRP78, anti-Drp1 (abcam, Cambridge, UK), anti-CD68 (Dako/Agilent, Markham, ON), anti-CCAAT/enhancer-binding protein (C/EBP) homologous protein (CHOP), anti-GRP75 (Pierce/Thermo, Waltham, MA), anti-CHOP (Enzo, Farmingdale, NY), anti-phosphofurin acidic cluster sorting protein 2 (PACS-2) (Protein Tech, Chicago, IL), anti-Rab32 (Sigma/Aldrich, St. Louis, MO), and anti-FLAG (Rockland, Limerick, PA). The antibody against calnexin has been described previously [25 (link)].
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4

Mitochondrial Dynamics Regulation Assay

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LPS was purchased from Sigma (MO, USA). Anti‐Sirt3, anti‐Cyt‐c and anti‐acetylated lysine were obtained from Cell Signalling Technology (MA, USA). Immunofluorescent Anti‐Sirt3 was purchased from Santa Cruz (CA, USA). Anti‐OPA1, anti‐Drp1, anti‐VDAC, anti‐TOM‐20 and anti‐GAPDH were purchased from Abcam (MA, USA). Anti‐Bax and anti‐YME1L1 were purchased from Proteintech (Wuhan, China). Anti‐Flag, Alexa Fluor 488‐ and 594‐conjugated fluorescent secondary antibodies and HRP‐conjugated secondary antibodies were purchased from Antgene (Wuhan, China).
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5

Protein Expression Analysis by Western Blot

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Protein expression was analyzed by Western blot. The total protein (50 μg) was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. After the protein is transferred to the polyvinylidene fluoride microporous membrane (Bio-Rad), the membrane is blocked with 5% skimmed milk powder and the primary antibody [anti-Bax, anti-PCNA, anti–β-catenin, anti-Drp1 (1:1,000 dilution, American Abcam), anti-NLRP3 (1:500 dilution, American Abcam), anti-ASC, or anti–caspase-1]; then anti-mouse (anti-rabbit (IgG)) is linked with fluorescein (1: 1,000), and then incubated with an antibody conjugated to anti-fluorescein alkaline phosphatase (1:5,000). The immune complexes were detected with enhanced chemiluminescence reagents. For quantification, the signal optical density was normalized to β-actin by Quantity One image analysis software.
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6

Quantifying Drp1 and NLRP3 in Colon Tissue

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The paraffin-embedded colon sections were deparaffinized, rehydrated, and pretreated with hydrogen peroxide in a PBS buffer. Heat-induced antigen retrieval was performed. The sections were incubated with anti-Drp1 (1:1,000 dilution, Abcam, United States) and anti-NLRP3 (1:100 dilution, Abcam, United States). The sections were incubated with HRP-conjugated secondary antibody, tyramide amplification was performed first, streptavidin-HRP was added, and then the DAB kit was used to show a positive signal. The sections were inspected at 400× magnification and analyzed using NIS-Elements. The following formula was used to calculate the positive content: positive content (PC) = average optical density x positive area.
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7

Antibody-Based Investigation of Cellular Pathways

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Our study was conducted using the following antibodies: rabbit polyclonal anti-iNOS, anti-GAPDH, anti-COX2, anti-Nur77, anti-LaminB1, anti-Drp1, anti-phospho-Drp1 (Ser637), and anti-Mfn2 purchased from Abcam (Cambridge, UK). We also used Rabbit polyclonal anti-p65, anti-phospho-p65, anti-ERK1/2, anti-phospho-ERK1/2, anti-JNK, anti-phospho-JNK, anti-p38, and anti-phospho-p38 purchased from Cell Signaling Technology Inc. (Danvers, MA, USA).
The chemical agents used in our study included Dulbecco’s modified eagle medium (DMEM), fetal bovine serum (FBS), penicillin, and streptomycin (Hyclone Laboratories Inc., Logan, UT, USA); Celastrol (MedChemExpress, Monmouth Junction, NJ, USA); LPS (Sigma-Aldrich, St. Louis, MI, USA); horseradish peroxidase (HRP)-labeled goat anti-rabbit IgG (H + L) and polyvinylidene fluoride (PVDF) (Beyotime Biotech, Jiangsu, China). The following kits were also used: BeyoECL Plus, Nuclear and Cytoplasmic Protein Extraction, Primary Antibody Dilution Buffer, and Mitochondrial Membrane Potential Assay with JC-1 (Beyotime Biotech, Jiangsu, China).
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8

Western Blotting of Mitochondrial Proteins

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Cells and heart tissues for western blotting were first lysed in RIPA buffer (Beyotime, Jiangsu, China). Mitochondrial fractions were isolated using the Mitochondria Isolation Kit, based on the manufacturer's instructions (PIERCE, Rockford, IL, USA). Proteins in the lysate (30 μg) were separated using SDS-PAGE and then transferred to PVDF membranes. The membranes were blocked in 5% skimmed milk and 0.1% Tween-20 for 1 h and then incubated with primary antibodies at 4°C overnight. The primary antibodies and dilutions used in this study were anti-SOCS6 (1 : 1000, Abcam, Cambridge, UK), anti-DRP1 (1 : 1000, Abcam), anti-DRP1 (phospho S637) (1 : 500, Abcam), anti-QK (1 : 1000, Cell Signaling Technology, Boston, MA, USA), anti-VDAC1 (1 : 1000, Abcam), and anti-β-actin (1 : 5000; Sigma-Aldrich, St. Louis, MO, USA). Membranes were either probed with horseradish peroxidase-conjugated with goat anti-rabbit IgG or goat anti-mouse IgG (Santa Cruz Biotechnology, Dallas, TX, USA). Final blots were visualized by an Amersham ECL Western Blotting Detection Reagent (GE Healthcare, Amersham, UK). The intensity of protein bands was quantified by ImageJ software.
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9

Mitochondrial Protein Analysis in Mouse Hearts

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Whole-cell lysates and mitochondrial fractions were obtained from mice hearts in different groups. Whole cell lysates were prepared as previously described [12 (link)]. Mitochondrial fractions were prepared by using the Mitochondria Isolation Kit (Beyotime Biotechnology, Jiangsu, China). Western blot analysis was performed as previously described [23 (link)]. The following primary antibodies were used: anti-Drp1 (Abcam), anti-VDAC1 (Abcam), and anti-GAPDH (Wuhan Boster Biological Technology).
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10

Immunophenotyping of T-cell Metabolism

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PBMCs were plated in a 96-well flat-bottom plate and cultured in RPMI-1640 supplemented with 10% FBS at a density of 2 × 106 cells per well. Cells were stimulated with 96-well plates coated with anti-CD3 (Clone: OKT3; 2 µg/mL, Biolegend, San Diego, CA, USA) or PBS control and measured at 4 h and 24 h timepoints at 37 °C/5% CO2. After stimulation, cells were stained with cell surface markers anti-CD3, -CD4, -CD27, -CD28, -CD45RO and -CD45RA, permeabilized and then stained with anti-GLUT1, anti-OPA1, anti-MFN2 and anti-DRP1 (Abcam, Cambridge, UK). Cell viability was assessed using Live/Dead Aqua (ThermoFisher, Waltham, MA, USA). Cells were analysed using the BD LSRFortessaTM X-20 cell analyser (BD Biosciences, Franklin Lakes, NJ, USA). Single-stained BD CompBeads were used to define compensation parameters. T-cell subsets were identified using the gating strategy observed in Figure 1.
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