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142 protocols using ab150075

1

Immunofluorescent Analysis of Neuronal Markers

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The cells grown on slides were fixed with 4% paraformaldehyde for 15 min and blocked with 1× phosphate buffer saline supplemented with 3 mg/mL bovine serum albumin, 100 mM glycine, and 0.25% Triton X-100 for 30 min. Subsequently, the slides were incubated with primary antibody rabbit anti-BDNF (1:500, ab108319), rabbit anti-light chain 3II (LC3II) (1:1000, ab48394), mouse anti-Tau (Tau-13, 1:500, Santa Cruz Biotechnology, Santa Cruz, CA, USA) and rabbit anti-BRUCE (5 µg/mL, ab19609) at 4 °C, followed by culture with the combination of the fluorophore and Alexa Fluor® 647 secondary antibody (1:200, ab150075) at room temperature for 1 h. All the antibodies used above were provided by Abcam except Tau. Then, the cell slides were added with 4′ 6-diamidino-2-phenylindole for nucleus staining, then immersed in distilled water, dried and observed under a fluorescence microscope (Zeiss, Thornwood, NY) or FV-1000 confocal microscope.
For morphological analysis, the cells were fixed with 4% paraformaldehyde for 15 min and incubated with tau antibody (1:200, ab64193, Abcam) for 1 h, followed by another incubation with fluorophore combined with Alexa Fluor® 647 secondary antibody (1:200, ab150075) for 1 h. The cells were then observed under the fluorescence microscope, and the length of the main axon in each cell was measured by five independent experiments.
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2

Immunofluorescence Staining of BMMSCs

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BMMSCs in 24-well plates were fixed with 4% paraformaldehyde (Aladdin, Shanghai, China), followed by permeabilization with 0.1% Triton X-100 (Beyotime) for 10 min. After blocking for 30 min, the cells were incubated with antibodies at 4°C for 8 h. Subsequently, the cells were incubated with a secondary antibody (ab150075, Abcam, Cambridge, UK) conjugated with phalloidin (Beyotime). Finally, the nucleus was counterstained with DAPI (Beyotime), and images were captured using a fluorescence microscope (Zeiss).
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3

Immunofluorescent Staining of DNase1 and DNase1L3

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Separate staining for DNase1 and DNase1L3 was performed using the protocol described previously [73 (link)]. Sections were incubated overnight at 4 °C with DNase1-polyclonal antibody (BS-7651R, Bioss, Woburn, MA, USA, 0.01 µg/mL) or DNase1L3-polyclonal antibody (BS-7653R, Bioss, Woburn, MA, USA, 0.01 µg/mL). The next day, sections were incubated for 30 min at room temperature with a donkey anti-rabbit-IgG Alexa Fluor 647 (AB150075, Abcam, Cambridge, UK) and DAPI (Invitrogen, Grand Island, NY, USA). Images were captured using a fluorescence microscope (KEYENCE BZ-9000, Keyence Corporation, Osaka, Japan). Exposure time was calibrated using the isotype control antibody (AB37415, Abcam, Cambridge, UK), with adjustments made to achieve a negative fluorescence signal in the control. Three to five samples were inspected microscopically, and one representative image was taken per condition.
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4

Immunohistochemical Detection of Germ Cell Markers

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Frozen sections (5 µm) were washed three times with PBS every 5 min, permeabilized with PBS containing 0.2% Triton X-100 for 8 min on ice, and washed with PBS containing 0.1% Tween 20 (PBST) for 5 min. Blocking treatment with PBS containing 1% Roche blocking reagent (Roche, Basel, Switzerland) was performed at room temperature for 1 h. The sections were incubated using anti-Oct3/4 (catalogue number 09-0023, 1:100 dilution; Stemgent Inc., Cambridge, MA, USA) or anti-DDX4/MVH (ab13840, 1:500 dilution; Abcam, Cambridge, UK). Fluorescence immunohistochemical detection was performed using a donkey anti-rabbit IgG H&L (Alexa Fluor 647) secondary antibody (ab150075, 1:300 dilution; Abcam) and DAPI (340-07971, 1:1000 dilution; Dojindo, Kumamoto, Japan). After treatment with the primary or secondary antibodies, they were washed three times with PBST for 15 min. The sections were sealed with ProLong Diamond Antifade Mountant (Thermo Fisher Scientific, Inc., Waltham, MA, USA).
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5

Immunohistochemical Analysis of Sympathetic Nerve Fibers

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Frozen samples were fixed in paraformaldehyde and cut into 8 μm sections; then, antigen was recovered and blocked and incubated with the primary antibodies overnight at 4°C. Afterward, we observed reaction products by secondary antibodies, and the sections were counter-stained with DAPI for 10 minutes. The following primary antibodies were used: rabbit anti-rat TH (Abcam, ab112, 1 : 100) was used to stain noradrenergic nerve fibers, and cholinergic cell bodies and nerve fibers were stained using goat anti-rat CHAT (Novus, NBP1-30052, 1 : 100). And mouse anti-rat GAP43 (Abcam, ab129990, 1 : 100) was used to localize sympathetic regeneration in the heart. The secondary antibodies used were as follows: donkey anti-rabbit IgG H&L (Abcam, ab150075, 1 : 200), donkey anti-goat IgG H&L (Abcam, ab6881, 1 : 500), and donkey anti-mouse IgG H&L (Abcam, ab150105, 1 : 600). The stained slides were observed under a Zeiss Vert A1 fluorescence microscope (Carl Zeiss Jena, German) [20 ]. Images were obtained in ten random fields per section, and analysis was performed with Image-Pro Plus analysis software (Media Cybernetics, USA).
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6

Antibody Characterization for Stem Cell Analysis

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Primary antibodies used were as follows: mouse anti-SSEA-4 (1:100, MAB4304, Millipore), goat anti-Nanog (1:20, AF1997, R&D Systems), rabbit anti-Oct4 (1:200, ab19857, Abcam), mouse anti-α-SMA (1:200, M0851, Dako), goat anti-Sox17 (1:200, AF1924, R&D Systems), rabbit anti-Tuj1 (1:2000, MRB-435P, Covance), mouse anti-Flag M2 (ICC, 1:500; WB, 1:100, F1804, Sigma), mouse anti-HA Tag (6E2) (ICC, 1:100; WB, 1:1000, #2367, Cell Signaling), rabbit anti-Tom20 (1:100, sc-11415, Santa Cruz), and mouse anti-GAPDH (1:1000, NB600-502, Novusbio). Alexa Fluor 488 (A11055 or A11034, Molecular Probes), Alexa Fluor 594 (A11005, Molecular Probes) and Alexa Fluor 647 (ab150075, Abcam)-conjugated secondary antibodies were used for immunofluorescent study.
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7

Immunofluorescence Imaging of Transfected Cells

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HEK-293T cells were seeded on cover slips and transfected with wild-type and mutated vector. Forty eight hours after transfection, cells were fixed with 4% paraformaldehyde (PFA), washed with PBS and permeabilized for 15 min with Triton X-100. For immunofluorescence staining, cells were incubated with the primary antibody against Flag-tagged epitope-specific mouse monoclonal antibody (1:100, 8146, CST, USA) and Calnexin (CNX) rabbit monoclonal antibody (1:100, 2679, CST, USA), followed by Donkey anti Rabbit IgG (H&L) Alexa Flour 647 (1:500, ab150075, Abcam, USA) and Donkey anti Mouse (H+L) Alexa Fluor 594 (1:500; A21203, Thermofisher, USA) fluorescent secondary antibody at room temperature for 1 h. Finally, all the cells were stained with 1 μg/mL 4′,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich) to visualize cell nuclei. Images were taken with a confocal laser-scanning microscope (NIKON Eclipse Ci) and processed using the CaseViewer software (3D HISTECH Ltd., Hungary).
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8

Evaluation of Nerve Transplant Integration

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To assess the transplantation site that forms nodular structures, the fixed proximal nerve portions were cut into 30 μm longitudinal frozen sections. To evaluate CNS cells in the transplant environment and the survival of the engrafted neurons, we used the following stains: Alexa Fluor 488 conjugated anti-Tuj1 antibody (801203, 1:400, Biolegend), Cy3 conjugated anti-GFAP antibody (ab49874, 1:400, Abcam, Cambridge, England), anti-MBP antibody (ab40390, 1:200, Abcam), anti-ChAT antibody (AB144P, 1:50 Sigma-Aldrich), and Hoechst (33342, 1:1000, Dojindo) for nuclear staining. Donkey Anti-Rabbit IgG H & L (Alexa Fluor 647) (ab 150075, 1:200, Abcam) for anti-MBP antibody and Donkey Anti-Goat IgG H & L (Alexa Fluor 594) pre-absorbed (ab 150136, 1:200, Abcam) for anti-ChAT antibody were used as secondary antibodies. We also stained the naive spine and common peroneal nerve with the same antibodies for comparison. We observed these sections using a confocal laser microscopy system (A1Rsi and Ti-E, Nikon, Tokyo, Japan).
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9

Multicolor Immunostaining of Liver Sections

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Liver sections were fixed with 4% paraformaldehyde and permeabilized with 0.1% Triton X-100 (Abcam, Cambridge, MA). On the first day of double staining, the sections were incubated with PRR and α-SMA antibodies or GFP and α-SMA antibodies (Table 3) for 16 hours at 4°C. Then, the sections were incubated with Alexa Fluor 488 donkey anti-sheep IgG H&L (ab150177; Abcam, Cambridge, MA) at a 1/1000 dilution for α-SMA and Alexa Fluor 647 donkey anti-rabbit IgG H&L (ab150075; Abcam) at a 1/1000 dilution for PRR and GFP for 120 minutes at 37°C on day 2 and counterstained with 4', 6-diamidino-2-phenylindole (Cell Signaling).
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10

Immunofluorescence Analysis of RUNX2 and SIRT1

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Cells (3 × 104/cm2) were cultured in induction medium in a 12-well plate, and runt-related transcription factor 2 (RUNX2) and SIRT1 were detected using a fluorescence microscope (EU5888; Leica) after 3 days’ induction. Briefly, the cells were fixed in 4% paraformaldehyde for 15 min at room temperature after treatment. They were then blocked for 30 min in 0.01% Triton X-100 and 5% bovine serum albumin. Fixed cells were washed and incubated overnight with anti-RUNX2 (#12556S; 1:400; Cell Signaling Technology, Shanghai, China) and SIRT1 (#8469S; 1:100; Cell Signaling Technology). Cells were then incubated with a fluorescence-conjugated secondary antibody (ab150077 or ab150075, Abcam, Shanghai, China) for 120 min at room temperature, and nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich, Shanghai, China) for 5 min; they were then observed using an inverted fluorescence microscope (Leica).
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