The largest database of trusted experimental protocols

38 protocols using anti p62

1

Western Blot Analysis of Cell Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein sample preparation and western blot assay were performed as previously described (24 (link)). The primary antibodies used were: anti-MTMR3 (1:500; cat. no. 12443; Cell Signaling Technology, Inc.), anti-Cyclin D1 (1:1,000; cat. no. 60186-1-1g; ProteinTech Group, Inc.), anti-cyclin-dependent kinase 2 (1:1,000; CDK2; cat. no. 11026-2-AP; ProteinTech Group, Inc.), anti-p62 (1:1,000; cat. no. 19117-1-AP; ProteinTech Group, Inc.), anti-p21 (1:1,000; cat. no. 2947; Cell Signaling Technology, Inc.), anti-Cyclin E (1:1,000; cat. no. sc-247; Santa Cruz Biotechnology, Inc.), anti-Cyclin A (1:1,000; cat. no. sc-751; Santa Cruz Biotechnology, Inc.), anti-cell division cycle 25 A (1:1,000; cdc25A; sc-7157; Santa Cruz Biotechnology, Inc.), anti-microtubule associated protein 1 light chain 3 (LC3) A (1:500; cat. no. 4599; Cell Signaling Technology, Inc.), anti-LC3B (1:500; cat. no. 3868; Cell Signaling Technology, Inc.) and anti-GAPDH (1:20,000; cat. no. 10494-1-AP; ProteinTech Group, Inc.). Bound HRP-labeled secondary antibody (1:5,000; cat. no. SC-2005 or SC-2054; Santa Cruz Biotechnology, Inc.) was assayed by super ECL detection reagent (Pierce; Thermo Fisher Scientific, Inc.). Protein density of western blots was analyzed using ImageJ 1.51k software (National Institutes of Health).
+ Open protocol
+ Expand
2

Perfluorooctane Sulphonate (PFOS) Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Perfluorooctane sulphonate (PFOS; potassium salt, purity ≥ 98%, Sigma-Aldrich, Shanghai, China) was dissolved in dimethyl sulphoxide (DMSO; Sigma-Aldrich, Shanghai, China) and stored at 20°C. N-acetyl-cysteine (NAC), 3-methyladenine (3-MA), and chloroquine (CQ) were purchased from Sigma-Aldrich (St. Louis, MO, USA; A7250-10G, M9281-100MG, and C6628-25G, respectively). Methyl thiazolyl tetrazolium (MTT) was purchased from Amresco (Solon, OH, USA, 0793-5g). A ROS assay kit was purchased from Beyotime Biotech (Nanjing, China, S0033). An AV-FITC/PI kit was purchased from KeyGen Biotech (Nanjing, China, #KGA108). Monodansyl cadaverine (MDC) and rhodamine 123 (Rh123) were purchased from Beyotime Biotech (P6659-20 μg and C2007, respectively). A BCA kit was purchased from Beyotime (Shanghai, China, P0012S). Anti-p62 was purchased from Proteintech (Shanghai, China, 55274-1-AP). Anti-LC3 was purchased from Sigma-Aldrich (Shanghai, China, L8918-200 μL). Anti-Bcl-2 and anti-Bax were purchased from CST (Shanghai, China, #3498 and #5023, respectively). Anticleaved-caspase-3 and β-actin were purchased from Santa Cruz, Paso Robles (CA, USA). Horseradish peroxidase- (HRP-) conjugated secondary antibodies and the SuperSignal West Pico Kit were purchased from Thermo (Waltham, MA, USA).
+ Open protocol
+ Expand
3

Western Blot Analysis of Autophagy and Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were boiled for 5 min in 5× SDS-PAGE loading buffer and loaded onto 10–15% SDS polyacrylamide gels. Proteins were transferred to PVDF membranes, and membranes were blocked for 2 h in Tris-buffered saline (pH 7.6) containing 0.1% Tween 20 with 5% non-fat dry milk and then incubated at 4° C overnight with the following primary antibodies: anti-LC3B (1:2,000; Sigma-Aldrich), anti-P62 (1:5,000; Proteintech), anti-P65 (1:1,000; Cell Signaling Technology), anti-phospho-P65 (1:1,000; Cell Signaling Technology), anti-ICAM-1 (1:200; Santa Cruz Biotechnology), anti-PI3K (1:1,000; Cell Signaling Technology), anti-phospho-PI3K (1:1,000; Cell Signaling Technology), anti-Akt (1:1,000; Cell Signaling Technology), anti-phospho-Akt (1:1,000; Cell Signaling Technology), anti-phospho-p70S6K (1:1,000; Cell Signaling Technology), or anti-GAPDH(1:50,000; Proteintech). Blots were washed and then incubated with the HRP-conjugated secondary antibody (1:10,000; Proteintech), and blots were revealed using ECL. ImageJ software was used for the semi-quantification of protein expression.
+ Open protocol
+ Expand
4

Protein Analysis of OSCC and Normal Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein was extracted using the kit (Beyotime Biotechnology, China), which included five samples of OSCC tissue paired with adjacent normal tissues. SDS-containing polyacrylamide gels were used to separate protein samples for transfer to polyvinylidene fluoride membranes (Millipore, USA). The membrane was treated with the primary antibody for an overnight period at 4 °C after being blocked with 5 percent BSA at room temperature. The primary antibodies were anti-p62 (1:1000; Proteintech, cat.no. 18420-1-AP), anti-LC3 (1:1000; Proteintech, cat.no. 14600-1-AP), anti-ATG5 (1:1000; Proteintech, cat.no. 10181-2-AP), anti-Bim (1:1000; Cell Signaling Technology, cat.no. #2933), anti-BCL-2 (1:1000; Proteintech, cat.no. 12789-1-AP), anti-Bax (1:1000; Cell Signaling Technology, cat.no. #14796), anti-GAPDH (1:2000; Elabscience, cat. no. E-AB-20072), and anti-Beclin-1 (1:1000; Proteintech, cat.no. 11306-1-AP). After three washes with TBST, the membrane was incubated for 1 h at room temperature with goat anti-rabbit IgG (1:10,000; Proteintech, cat.no. 10285-1-AP).
+ Open protocol
+ Expand
5

Protein Expression Analysis in HCC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples and HCC cells were lysed using RIPA lysis buffer supplemented with PMSF (1:100, G-CLONE) to obtain total proteins. The proteins concentration was estimated using the BCA protein quantification kit (Solarbio). Equal amounts of protein were subjected to SDS-PAGE, proteins were then transferred onto PVDF membranes (PerkinElmer). After blocking with skimmed milk or BSA, the membranes were incubated with the primary antibodies overnight at 4 ℃. Primary antibodies were as follows: anti-EVA1A (1:500, Abcam), anti-TP53 (1:1000, OriGene), anti-BAX(1:2000, OriGene), anti-BCL-2 (1:2000, Bioss), anti-p-JAK2 (1:1000, Cell Signaling Technology), anti-p-STAT3 (1:1000, Cell Signaling Technology), anti-MMP-9 (1:1000, Cell Signaling Technology), anti-LC3 (1:1000, MBL), anti-p62 (1:1000, Proteintech), anti-Beclin1 (1:2000, Proteintech) and anti-β-actin (1:1000, Servicebio). And then the blot was incubated with peroxidase-conjugated sheep anti-rabbit IgG (1:3000, Servicebio). Protein bands were detected using the ECL system. Each independent experiment was performed at least three times.
+ Open protocol
+ Expand
6

Succinic anhydride-conjugated PEI for P-glycoprotein silencing

Check if the same lab product or an alternative is used in the 5 most similar protocols
Succinic anhydride, b-PEI (MW 1,800), b-PEI (MW 250,000), 2-(7-Azabenzotriazol-1-yl)-N, N, N', N'-tetramethyluronium hexafluorophosphate (HATU), N-ethyldiisopropylamine (DPIEA) et.al was purchased from Adamas-beta (Shanghai, China). All of solvent were purchased from Macklin (Shanghai, China). Chloroquine Phosphate was obtained from Sigma-Aldrich (St. Louis, MO, USA). Antibodies used for Western Blotting and immunofluorescence including rabbit anti-LC3B, anti-p62, anti-Pgp, goat anti-rabbit IgG (H + L) (HRP, Cora Lite 594) were obtained from Proteintech (Wuhan, China). Alexa fluor 647-labeled goat anti-rabbit IgG (H + L), rabbit anti-CD44, anti-ki67, Ad-GFP-LC3B, Lyso-Tracker Red, TUNEL Apoptosis Assay Kit, acid phosphatase assay kit et.al were purchased from Beyotime (Shanghai, China). All other reagents for western blotting and gel electrophoresis were obtained from Solarbio (Beijing, China).
Targeting human P-gp siRNA sequences:
Sense: 5’-AAGAAGGAAAAGAAACCAACUdTdT-3’;
Anti-sense: 5’-AGUUGGUUUCUUUUCCUUCUUdTdT-3’.
All of siRNA were obtained by GenePharma Co. Ltd. (Shanghai, China).
+ Open protocol
+ Expand
7

Western Blot Analysis of Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were exacted with an appropriate volume of lysis buffer. After electrophoresis on SDS-PAGE, proteins were transferred onto PVDF membranes (Millipore). Antibodies used here were anti-LC3I/II (Sigma), anti-P62 (Proteintech), anti-notch1 (Cell Signaling Technology), anti-Hes-1 (Santa Cruz), anti-GAPDH (Cell Signaling Technology), anti-Tublin (Cell Signaling Technology) and goat anti-rabbit IgG HRP (Cell Signaling Technology).
+ Open protocol
+ Expand
8

Fluorescent Western Blotting for Autophagy Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
After treatments, cells were briefly washed with PBS, directly lysed in 1× SDS sample buffer and boiled for 5 minutes. About 20 µg of sample lysates were separated by SDS-PAGE and transferred to nitrocellulose membranes. Fluorescent western blotting was performed as previously described (Erie et al. 2015 (link)). The following primary antibodies were used: rabbit polyclonal anti-LC3B (1:500, Cat. #3868, Cell Signaling Techology, Danvers, MA), rabbit polyclonal anti-p62 (1:1000, Cat. #18420-1-AP, Proteintech, Rosemont, IL), mouse monoclonal anti-p62 (1:1000, Cat. #56416, Abcam, Cambridge, MA), mouse monoclonal anti-Ub (clone P4D1, 1:1000, Cat #14-6078-82, eBiosciences, San Diego, CA), Rabbit monoclonal anti-K48-linked Ub (clone Apu2, 1:1000, Cat. #05-1307, Millipore, Temecula, CA), Rabbit monoclonal, anti-K63-linked Ub (1:1000, Cat #179434, Abcam) and mouse monoclonal anti-actin [1:1000, Cat. #sc-47778, Santa Cruz Biotechnology (SCBT), Santa Cruz, CA]. Fluorescent signals were detected with a LI-COR Odyssey Fc system and bands were quantified by densitometric analysis using the provided Image Studio 2.0 software.
+ Open protocol
+ Expand
9

Expressing Mutant VCP Proteins in U2OS Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The GFP-fused VCP expression plasmid is previously described [25 (link)]. The mutations VCP-R155H, VCP-R95C and VCP-I27V were introduced using site-directed mutagenesis kit (Stratagene, La Jolla, CA). Forty-eight hours post-transfection into U20S cells, cells were harvested and lysates were separated via SDS-PAGE, transferred to nitrocellulose and immunoblotted using the following antibodies [anti-p97/VCP (Fitzgerald, Acton, MA), anti-p62 (Proteintech, Chicago, IL), anti-GAPDH (Sigma-Aldrich), and anti-LC3 (Sigma-Aldrich)] as previously described [24 ].
+ Open protocol
+ Expand
10

Western blot and immunoprecipitation of brain proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dissected mouse brain tissues were lysed in RIPA buffer and the protein homogenates were then separated by SDS-PAGE and transferred onto a polyvinylidene fluoride membrane. After blocking, the membranes were incubated overnight with primary antibodies, followed by washing and incubation with horseradish peroxidase conjugated secondary antibody for 1 h. Immunoreactive bands were then visualized using the ECL reagent (WBKLS0100, Merck Millipore). The densities of the immunoblotting bands were semiquantified using Image J software (National Institutes of Health). The primary antibodies used were as follows: anti-tyrosine hydroxylase (TH) (#T2928, Sigma), anti-α-synuclein (#ab1903, Abcam), anti-SIRT1 (#07–131, Millipore), anti-p62 (#18420–1-AP, Protein Tech Group), anti-LC3B (#18725–1-AP, Protein Tech Group), anti-acetyl-Lysine (#05–515, Millipore), anti-caspase-3 (#9662, CST), and anti-GAPDH (#10494–1-AP, Protein Tech Group).
For immunoprecipitation, extracted proteins were incubated with anti-LC3B (#3868, CST) at 4°C overnight with rotation, followed by precipitation with protein A agarose beads (P2012, Beyotime). Immunoprecipitates were then washed and subjected to SDS-PAGE separation. Subsequent immunoblotting procedures were the same as described above.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!