The largest database of trusted experimental protocols

6 protocols using sybr green premix pro taq hs qpcr kit ag11701

1

Profiling Transcriptional Responses in Brain Endothelial Cells Infected with Cronobacter sakazakii

Check if the same lab product or an alternative is used in the 5 most similar protocols
HBMEC were seeded in 60-mm dishes to 70–90% confluence and infected with C. sakazakii ATCC 29544 for 0, 1, 2, 3, and 4 h (MOI = 100). Total RNA was extracted from HBMEC using RNAeasyTM Animal RNA Isolation Kit R0026 (Beyotime), and then reverse transcribed to cDNA using Evo M-MLV RT Premix AG11706 (Accurate Biotechnology, Changsha, China) with the suppliers’ instructions. Quantitative Real-Time PCR was performed with SYBR® Green Premix Pro Taq HS qPCR Kit AG11701 (AG11701; Accurate Biotechnology) on a Bio-Rad iQ5 PCR system (Bio-Rad). The primer sequences for RT-PCR are shown in Table 1. ACTB was used as the control. The Ct values for RT-PCR samples were recorded. The relative mRNA levels were analyzed with the 2−ΔΔCt method.
+ Open protocol
+ Expand
2

Quantitative Real-Time RT-PCR for Gene Expression Analysis in Chinese Cabbage

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was extracted from Chinese cabbage roots using Trizol reagent (Tiangen, Beijing, China) according to the manufacturer’s protocol. First-strand cDNA was obtained using reverse transcription performed with MonScript™ RTIII Super Mix (Monad, China). Quantitative real-time RT-PCR was performed using the SYBR® Green Premix Pro Taq HS qPCR Kit AG11701 (Accurate Biotechnology, Changsha, China). For reference genes, 18s and Pbactin were used for B. rapa. and P. brassicae, respectively. PCR reactions were carried out in triplicate with three independent RNA samples, and the primers were synthesized by Hongxun Biological Company (Suzhou, China) and are listed in Supplementary Table S1. The 2−ΔΔCt [68 ] method was used to analyze the relative gene expression level.
+ Open protocol
+ Expand
3

Quantitative Analysis of Gut Microbiome DNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fecal samples (approximately 0.2 g) were homogenized using a bead beater, and then the total DNA was extracted using the QIAamp DNA stool mini kits (Qiagen GmbH, Hilden, Germany) according to protocols detailed in our previous study (7 (link)). The quality of DNA extracts was assessed using 1% agarose gel electrophoresis, and the quantity of DNA was tested on the basis of absorbance at 260 and 280 nm using a Nano Drop 2000 spectrophotometer (Thermo Scientific, Waltham, USA).
The quantitative real-time PCR analysis of total bacteria was carried out with an ABI 7900 sequence detection system (Applied Biological System, Foster, CA, USA), using SYBR green premix Pro Taq HS qPCR kit AG11701 (Accurate Biotechnology [Hunan] Co., Ltd.). The specific test procedures were in accordance with Jiao et al. (13 (link)).
+ Open protocol
+ Expand
4

Ratiometric Fluorescent Biosensor Validation

Check if the same lab product or an alternative is used in the 5 most similar protocols
RT-qPCR was used as the reference to test the accuracy of the ratiometric fluorescent biosensor. A total of 3.75 μL of RNAs were reverse transcribed by Mir-X™ miRNA First-Strand Synthesis (Takara, Kusatsu, Japan) on T100TM Thermal Cycler (Bio-Rad, Shanghai, China) to synthesize cDNAs. RT-qPCR was carried out by SYBR® Green Premix Pro Taq HS qPCR Kit AG11701 (Accurate Biology, Shanghai, China) on a CFX96TM Real-Time System (Bio-Rad, China). The calibration line was drawn based on the real-time fluorescence curves obtained at different concentrations of miR-92a-3p.
+ Open protocol
+ Expand
5

Quantifying mRNA Expression via qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolation of total RNA from cells entailed the use of Trizol reagent, followed by reverse transcription of 1 μg of total RNA into first-strand cDNA utilizing a reverse transcriptase kit (Thermo Fisher, America). To quantify mRNA levels, qPCR was executed employing the SYBR® Green Premix Pro Taq HS qPCR Kit AG11701 (Accurate Biotechnology, China) on a Real-time fluorescence quantitative PCR system (Bio-Rad, USA). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was enlisted as the internal control, with the 2-∆∆Ct method serving as the calculation methodology. Comprehensive insight into primer sequences employed for qRT-PCR, along with those pivotal for RIP, was collated within Table Supplementary 2 for qRT-PCR and Table Supplementary 3 for RIP.
+ Open protocol
+ Expand
6

Transcriptional Response of Plants to Submergence and Waterlogging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three 24 h treatments including submergence (the whole plant was submerged with a water level of 1~2 cm above the shoot tip), waterlogging (water level above the soil for about 1 cm) and a control (CK) were set. After digging out from the soil, the seedlings were immediately washed with tap water. Plants were divided into three parts: ‘leaves’ (twigs and needles), stems, and roots. All materials were stored at −80 °C. RNA extraction and reverse transcription were performed within one month. The mRNA concentration was unified at 100 ng/µL before reverse reaction. cDNA was stored at 4 °C for one month before qPCR. The qPCR experiment was performed using a SYBR® Green Premix Pro Taq HS qPCR Kit AG11701 produced by Accurate Biotechnology (Hunan) Co., Ltd., Changsha, China, and the reaction was carried out with a StepOnePlus instrument, Applied Biosystem, America. Three biological replicates were conducted in the experiments. Three technical replicates were set for each treatment/organ/gene. The actin gene was exploited as the reference gene [48 (link)], and the qPCR primers are shown in Table S1.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!