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6 protocols using tgf beta 1

1

Immunohistochemical Analysis of Kidney Tissue

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Three μm thin sections of the kidney tissue blocks were used for immunohistochemical analysis using a standard method as described previously73 (link)74 (link)75 (link). Briefly the tissue sections were incubated with 10% non-immune goat serum followed by primary antibodies against fibronectin IST-9, collagen IV or TGF beta 1 from Abcam Inc or with Rage or E-cadherin from Santa Cruz Biotechnology (Santa Cruz, CA) Images were captured using a Nikon Eclipse E600 light microscope and quantified by image J software with IHC profiler plugin as described by Varghese et al. 201476 (link).
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2

Aorta Extracellular Matrix Protein Analysis

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Aorta segments were homogenized in RIPA buffer containing proteases and phosphatases inhibitors. Antibodies against collagen I and collagen III, SMAD 3, TGF beta 1 (1/1000 dilution), cathpesin S (1/2000 dilution, all Abcam, Cambridge, MA, United States) and AT1 (1/1000 dilution, Santa Cruz Biotechnology, Santa Cruz, CA, United States) were used in this study. Antibody against β-actin (1/20 000) was used as control. Protein bands were developed with an enhanced chemiluminescence substrate (PerkinElmer Inc, Waltham, MA) and quantified using ImageJ 1.36b (http://rsbweb.nih.gov/ij/).
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3

Protein Extraction and Western Blotting

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Proteins were extracted from mouse hearts with T-PER tissue protein extraction reagent (Thermo Scientific) plus proteinase inhibitors. RIPA buffer plus proteinase inhibitors was used to extract protein from cardiomyocytes and cardiac fibroblasts isolated from adult mouse hearts and in vitro cultured NRVMs. Protein samples were quantified and separated with SDS-PAGE before transfer to a nitrocellulose membrane, followed by antibody probing. ChIP assays were performed as described previously3 (link) with specific gene primers as indicated (listed in Supplementary Table 1). The following primary antibodies were used: GAPDH (Santa Cruz, sc-20358), H3K9Me2 (Abcam, ab1220), H3K9me3 (Abcam, ab8898), H3K4me3(Active Motif, 39159), and H3K27me3 (Millpore, 07-449), Histone H3(CellSignaling, 4499), FLAG (Sigma-Aldrich, F1804), TIMP1 (Invitrogen, MA1-773), ANP (Novus, NBP2-14873), TGFbeta1 (Abcam, ab-64715), pSMAD3 (Santa Cruz, sc11769), SMAD3(Santa Cruz, sc-133098). All antibodies were diluted 1:1000 in western blot. The original un-cropped western blots with molecular weight markers were presented in supplementary figure 7.
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4

Evaluating Triptolide's Impact on CAF ECM

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To evaluate the effects of triptolide on ECM secretion of CAFs, we measured concentration of total collagens, fibronectin (FN), periostin, hyaluronic acid (HA), matrix metallopeptidase 2 (MMP2), and MMP9 in CM derived from CAFs. Enzyme-linked immuno sorbent assay (ELISA) was used to quantify FN (BioVision, CA, USA), periostin (Thermo Scientific), HA (TSZELISA, MA, USA), MMP2 (Abcam), and MMP9 (Abcam). Total collagen was quantified by Sircol collagen assay kit (Biocolor Life Science Assays, County Antrim, UK). Meanwhile, autocrine signaling of TGF-Beta 1 (Abcam) and TGF-Beta 2 (R&D Systems, MN, USA) were determined by ELISA in CM. All the experiments were performed according to the manufacturer’s protocol.
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5

Quantification of Serum Biomarkers

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The concentrations of the target proteins in the serum of studied patients were determined using the Collagen type 2 kits (MyBioSource, San Diego, CA, USA), BMP-2, TIMP-1, TIMP-2, TGF beta 1, and COMP ELISA kits (Abcam, Cambridge, UK) according to the manufacturer’s protocols and recommendations. These kits used the double antibody sandwich ELISA technique. The optical density value of the target biomarker in the sample was determined at 450 nm using a microplate reader (TriStar LB941, Berthold Technologies, Bad Wildbad, Germany). Then the standard curve was constructed using a 5-parameter logistic curve fitting method and the protein concentrations of the tested samples were calculated according to the manufacturer’s instructions.
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6

Western Blot Analysis of Protein Expression

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Protein samples from mice hearts or HUVECs lysates were assessed using BCA-kit (23227, Thermo Fisher Scientific, Waltham, MA, USA) and normalized to the same concentration before all western blotting (WB) experiments. 50 μg of protein samples were separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis and then transferred to Immobilon-FL transfer membrane (IPFL00010, Millipore, Billerica, MA, USA). The membranes were blocked with 5% milk in Tris-buffered saline Tween-20 (TBST) for 3 hours and then incubated with indicated primary antibodies overnight at 4°C. Antibodies against the following proteins were purchased from Cell Signaling Technology (Danvers, MA, USA): Smad2 (#3103s), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (#2118), and phosphor-Smad2Ser465/467 (#3101). Antibodies against the following proteins were purchased from Abcam (Cambridge, MA, USA): alpha smooth muscle actin (α-SMA) (#ab7817), TGF-beta 1 (#ab66043), and CD31 (#ab24590). Antibodies against the following proteins were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA): peroxisome proliferator-activated receptor-γ (PPAR-γ) (#sc-7196), Smad4 (#sc-7966), and vimentin (#sc-5565). The blots were scanned by a two-color infrared imaging system (Odyssey, LI-COR, Lincoln, NE, USA). Specific protein expression levels were normalized to GAPDH protein for total cell lysates.
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