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4 protocols using docosapentaenoic acid

1

Fatty Acid Quantification by LC-MS/MS

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The following chemicals were purchased from Tokyo Chemical Industry (Tokyo, Japan): n-octanoic acid (C8:0), lauric acid (C12:0), myristic acid (C14:0), palmitic acid (C16:0), cis-9-hexadecenoic acid (C16:1), stearic acid (C18:0), γ-linolenic acid (C18:3), cis-5,8,11,14,17-eicosapentaenoic acid (EPA; C20:5) and arachidonic acid (C20:4). Decanoic acid (C10:0), 9-decenoic acid (C10:1), oleic acid (C18:1), arachidic acid (C20:0), all-cis-7,10,13,16,19-docosapentaenoic acid (DPA, C22:5), docosanoic acid (C22:0), tetracosanoic acid (C24:0), hexacosanoic acid (C26:0), DAABD-AE, N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC), 4-(dimethylamino) pyridine (DMAP) and perfluorooctanoic acid (PFOA) were purchased from Sigma-Aldrich (Taufkirchen, Germany). The following deuterium or 13C labeled analogs used as IS were purchased from Cambridge Isotopes Laboratories (Tewksbury, MA, USA): 13C4-C8:0, d3-C10:0, d3-C12:0, d3-C14:0, d4-C16:0 and d3-C18:0. PRA, PHA, d3-PRA, d3-PHA, d4-C22:0, d4-C24:0, and d4-C26:0 were obtained from Dr. H. J. Ten Brink (Vrije Universiteit Medical Center, Amsterdam, The Netherlands). LC-MS/MS grade acetonitrile and water were purchased from Merck (Darmstadt, Germany). Merck also supplied us with HPLC grade hexane, toluene, and heptane.
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2

Detailed Fatty Acid Profiling Protocol

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The chemicals required for growth medium were obtained from VWR, Ireland, Thermo Fisher Scientific, Ireland, and Sigma Chemicals, Arklow, Ireland. HCl, NaOH, and sodium sulfate crystals were purchased from VWR, Ireland Acetonitrile, ammonium acetate, dichloromethane, chloroform, methanol, spectrophotometric grade 95% ethanol, sodium dodecyl sulphate, Tween-20, potassium dichromate, sulphuric acid, formic acid, phenol were also purchased from Sigma Chemicals. Fatty acid standards such as lauric acid (C12:0), myristic acid (C14:0), palmitic acid (C16:0), stearic acid (C18:0), oleic acid (C18:1n-9 cis), linoleic acid (LA, C18:2n-6 cis), γ-linolenic acid (GLA, C18:3n-6), arachidonic acid (ARA, C20:4n-6), eicosapentaenoic acid (EPA, 20:5n-3), docosapentaenoic acid (DPA, 22:5n-3) and docosahexaenoic acid (DHA, 22:6n-3) were obtained from Sigma Chemicals (Arklow, Ireland). All solvents used in this study were HPLC or analytical grade, and the water was ultrapure (TKA High Purity Water Systems, Niederelbert, Germany).
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3

Quantification of Lipid Biomarkers in Rodent Diets

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Deuterated and control diets were obtained from Research Diets, Inc (D20100101 and D20100202, New Brunswick, NJ). 11,11-d2 linoleic acid ethyl ester (DLA-EE) was provided by Retrotrope Inc. EZ-Link™ Sulfo-NHS-LC-Biotin (21,335, biotinylating reagent) and APC streptavidin were purchased from Thermo Fisher Scientific (349,024, Waltham, MA), and BD Biosciences (Franklin Lakes, NJ), respectively. Phosphate buffered saline, 1X (PBS; 21-040-CM was purchased from Corning (Corning, NY). Leukoreduction filters (AP-4952) were purchased from Pall (Port Washington, NY).
Fatty acid methyl esters (FAME) standard mixture (FAME 25) was purchased from USP (1269119; Rockville, MD), while methyl esters of arachidonic acid (AA, 2566-89-4), docosahexaenoic acid (DHA, 2566-90-7), docosapentaenoic acid (DPA, 108698-02-8), eicosapentaenoic acid (EPA, 2734-47-6), and nonadecanoate (C19:0, 1731-94-8), as well as malondialdehyde (MDA, 100,683-54-3), were purchased from Sigma (St. Louis, MO). Malondialdehyde-D2 (MDA-D2, D-6469) was purchased from CDN Isotopes (Pointe-Claire, QC, Canada). Heptane (34,873), hexane (34,859), pentane (34,956), methanol (34,860), and hydrochloric acid in methanol (90,964) were purchased from Sigma. Liquid chromatography-mass spectrometry (LC-MS) grade water was purchased from Supelco (Bellefonte, PA, WX0001). Chloroform was purchased from J.T. Baker (67-66-3, Phillipsburg, NJ).
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4

Comprehensive Metabolite Profiling Setup

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LC-MS grade acetonitrile was purchased from Fisher. Ammonium acetate, ammonium formate, UDP-GlcNAc, UDP-GalNAc, ammonium hydroxide (NH4OH; 5 m), G6P, F6P, octanoic acid, docosapentaenoic acid, glucose, glucosamine hydrochloride, oleic acid, sodium l-lactate, sodium pyruvate, l-carnitine, l-glutamine, insulin from bovine pancreas, sodium chloride, sodium bicarbonate, potassium chloride, calcium chloride, magnesium chloride, and potassium phosphate monobasic were obtained from Sigma-Aldrich. [1,2-13C2]UDP-GlcNAc was from Omicron Biochemicals (South Bend, IN), and l-[U-13C5,15N2]glutamine was from CIL (Cambridge Isotope Laboratories, Andover, MA). Water for the LC-MS and GC-MS was purified by a Milli-Q system (Millipore, Montreal). BSA fraction V-fatty acid-free grade was from Gemini Bio-Products (West Sacramento, CA). [U-13C6]glucose (MPE = 99%) was from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA). d-[U-13C6]glucosamine hydrochloride (MPE = 99%) was from Omicron Biochemicals. Blebbistatin was from Selleck Chemicals (Houston, TX).
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