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3 protocols using phosstop inhibitor cocktail tablets

1

Protein Extraction and Quantification

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Rat tissues were homogenized in RIPA buffer (Thermo Scientific, Rockford, IL, USA) with protease (complete, Mini, EDTA-free) and phophatase (PhosSTOP) inhibitor cocktail tablets (Roche, Indianapolis, IN, USA). A similar homogenization buffer [35 (link)] was used for human samples. Homogenates were sonicated, incubated on ice for 15–30 min and then centrifuged at 13000 × g for 10–20 min at 4°C to precipitate insoluble debris. The supernatants were collected and protein concentrations were determined using the BCA protein assay kit (Thermo Scientific, Rockford, IL, USA) or the DC™ protein assay (Bio-Rad Laboratories, Mississauga, Ontario, Canada) as described by the manufacturer. Rat tissue lysates were pooled in order to handle a large number of samples that exceeded the lane capacity of a gel, while human homogenates were not pooled. Sample protein concentrations were adjusted to 4 μg/μl (rat) or 1.5-3.5 μg/μl (human) for Western blotting.
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2

Protein Extraction from Tissue Samples

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Homogenization of tissue took place in 300 μL of lysis buffer [0.15 NaCl, 1% TX-100, 10% glycerol, 1 mM EDTA, 50 mM TRIS pH = 7.4] containing a phosphatase and protease inhibitor cocktail [Complete ULTRA Protease Inhibitor Cocktail Tablets (Cat# 5892970001) and PhosSTOP Inhibitor Cocktail Tablets (Cat# 4906837001) respectively; Roche]. Centrifugation of homogenates took place at 12,200 rpm for 20 min at 4°C and supernatants were collected for quantification of protein content using the Pierce BCA protein assay kit (ThermoFisher, Cat# 23225), following manufacturer’s instructions.
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3

Western Blot Analysis of Cdk5 Signaling

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Tissue homogenates were lysed in tissue protein extraction reagent (Thermo Fisher Scientific) containing protease (cOmplete Mini) and phosphatase (PhosSTOP) inhibitor cocktail tablets (both Roche, Indianapolis, IN). Total protein concentration was measured using a Bradford Protein Assay (Bio-Rad, Hercules, CA). Protein of 40 µg was separated on a 4% to 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (Thermo Fisher Scientific), transferred to a 0.45-µm nitrocellulose membrane, and immunoblotted with antibodies directed against p39 (Abcam, Cambridge, MA), p35 (C-19), Cdk5 (C-8) (both Santa Cruz Biotechnology, Santa Cruz, CA), and tubulin (Sigma-Aldrich) overnight. Membranes were washed with phosphate-buffered saline plus 5% nonfat dry milk with 0.05% Tween 20 (Sigma-Aldrich) and then incubated for 1 h with 1:2000 dilution of anti-mouse/anti-rabbit secondary antibody conjugated to horseradish peroxidase (Santa Cruz Biotechnology). The membranes were developed with SuperSignal West Pico or Dura Chemiluminescent Substrate (Thermo Fisher Scientific).
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