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27 protocols using fungitell assay

1

Fungitell Assay for BDG Detection

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BDG was performed in each center using the Fungitell assay (Associates of Cape Cod) in accordance with the manufacturer’s instructions. BDG > 80 pg/mL was considered positive. BDG categories were defined as <80, 80–200, 200–523, and >523 pg/mL to separate negative, weakly positive, positive, and strongly positive results. BDG > 523 pg/mL were arbitrarily set at 524 pg/mL.
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2

Biomarkers for Fungal Infections

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BDG, PSEP, PCT, CRP, and creatinine levels were measured in accredited laboratories of the Public Health Institute in Ostrava and participating hospitals. BDG measurements were performed using the Fungitell assay (assay range < 0.07–2197 pg/mL, Associates of Cape Cod, Inc., East Falmouth, MA, USA). PSEP (assay range 15–30,000 pg/mL) and PCT (assay range 0.02–75 ng/L) were measured using a quantitative sandwich chemiluminescence immunoassay (Pathfast, Mitsubishi, Japan, and ADVIA Centaur, BRAHMS PCT Assay, Siemens, Munich, Germany). CRP (assay range 1–480 mg/L) was measured using the CRP Latex test (Beckman Coulter, Breya, CA, USA).
Candida spp. and bacteria were identified by MALDI-TOF mass spectrometry (Bruker Daltonics, Bremen, Germany).
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3

Fungitell Assay for Serum BDG Evaluation

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Serum BDG was evaluated using the Fungitell assay (Associates of Cape Cod, Inc., Falmouth, MA, USA) according to the manufacturer’s instruction. Samples with BDG levels < 31 pg/mL and >500 pg/mL although outside the Fungitell assay range (31–500 pg/mL) were statistically analyzed as 31 pg/mL and 500 pg/mL, respectively [30 (link),31 (link)]. Serum ESR was tested by an automated analyzer (JOKOH Monitor-20, Tokyo, Japan) using an infrared barrier method. Normal range is 0–15 mm/h for males and 0–28 mm/h for females. Serum CRP was measured via immunoturbidimetric assay on a clinical chemistry analyzer (Abbott Alinity ci-series, Chicago, IL, USA, normal range 0–5 mg/L).
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SARS-CoV-2 and Aspergillus Diagnostics

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SARS‐CoV‐2 PCR was performed by in‐house PCR or by Cepheids GeneXpert Xpress SARS‐CoV‐2 PCR as described by Wolters et al.24 Triazole susceptibility screening was done using VIPcheck™ (Mediaproducts BV). MICs of Aspergillus fumigatus isolates were determined with broth microdilution using CLSI standards.25 Fungal PCR targeting the Cyp51A gene was done using AsperGenius™ (PathoNostics). 1‐3 β‐d‐glucan (BDG) testing was done using the Fungitell assay (Associates of Cape Cod Inc). Galactomannan (GM) testing was done using Platelia Aspergillus (Bio‐Rad) and/or Aspergillus lateral flow device (AspLFD, OLM Diagnostics).
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5

Fungal Blood Culture Identification

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Blood cultures were obtained as part of normal clinical practice and processed using a Bactec (BD Diagnostic Systems, Sparks, MD) or BacT/Alert (bioMérieux, Marcy l’Etoile, France) system. After subculturing on Difco Candida bromocresol green (BCG) agar medium, yeast isolates were identified to the species level by matrix-assisted laser desorption ionization-time of flight mass spectrometry (36 (link)). Sera from blood specimens of patients were tested for the presence of β1,3-D-glucan by the Fungitell assay (Associates of Cape Cod Inc., Falmouth, MA; range of the assay from 31.25 to 500 pg/mL), as previously described (37 (link)). The assay was considered positive if the value was ≥80 pg/mL, according to the cutoffs proposed by the manufacturer.
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6

Serum BDG Detection Using Fungitell Assay

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The BDG detection was performed in serum samples using the Fungitell® assay, which is a commercially available kit (Associates of Cape Cod., East Falmouth, MA, USA). The assay was conducted according to the manufacturer’s protocol. Serum samples were analyzed in duplicate, and the mean value of the duplicates was used for further analysis. The positivity cutoff for the assay was set at ≥80 pg/mL, as per the manufacturer’s instructions. If the BDG results were higher than 523 pg/mL, no further dilutions were carried out.
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7

Fungitell Assay for Invasive Fungal Infection

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BG measurements was carried out using the Fungitell® assay (Associates of Cape Cod, Inc.) as per manufacturer’s instructions[26 ], [27 (link)]. In brief, 5μL of sample was mixed with 20μL pre-treatment buffer (0.125M KOH/6M KCl), in microplate wells, and incubated at 37°C for 10min. Fungitell reagent, reconstituted in 0.1M Tris HCl, pH 7.4, was added to sample and standard curve wells (7.8–500pg/mL, Pachyman). The reactions were read kinetically, at 405nm minus 490nm at 37°C, for 40min. Vmean values (milliabsorbance units/min) were calculated for standards and samples and sample titres interpolated from the standard curve. CV for all assays was <20%. Normal human serum contains low levels of BG, typically 10-40pg/mL[28 (link)]. Levels <60pg/mL are interpreted as negative and between 60-80pg/mL is interpreted as indeterminate. Levels >80pg/mL is interpreted as positive and in at-risk patients is considered a marker of invasive fungal infection[26 ], [29 (link)].
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8

Invasive Aspergillosis Biomarker Evaluation

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At the Medical University of Graz, Austria, urine samples were prospectively tested for GM (Platelia Aspergillus Ag ELISA; Bio-Rad Laboratories, Munich, Germany) and creatinine levels. Urine GM levels were then normalized to the urine creatinine content, by dividing GM absolute urine levels by creatinine urine levels and multiplication with the factor 100. Following previous recommendations, a GM/creatinine index of >0.25 was defined as positive (6 (link)). Blood samples were collected simultaneously (i.e., on the same day) with urine samples and tested routinely for GM and BDG levels (Fungitell assay; Associates of Cape Cod, Inc, East Falmouth, USA) as described previously (14 (link), 33 (link)). Samples were stored at −70°C and shipped in 2016 on dry ice to the Innsbruck Medical University, for retrospective TAFC determination. In part these samples have been published before (6 (link), 34 (link), 35 (link)).
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9

Fungitell Assay for Beta-Glucan

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BG testing was performed at MiraVista Diagnostics (Indianapolis, IN) using the Fungitell assay (Associates of Cape Cod Inc., East Falmouth, MA), in accordance with the manufacturer's instructions [21 ]. For the purposes of our study, specimens were tested in duplicate and BG levels were reported numerically (12).
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10

Fungitell Assay for Candida Identification

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BDG evaluation was performed with the Fungitell assay (Associates of Cape Cod, Cape Cod, MA, USA). All samples were stored at -20°C, and assays were performed according to the manufacturer's recommendations. Identification of Candida spp. was performed by the VITEK 2 automated system (bioMérieux, Marcy l'Etoile, France).
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