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4 protocols using tgfβr1

1

Protein Expression Analysis by Western Blot

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Total proteins were extracted from cells using radioimmunoprecipitation assay (RIPA) lysis buffer (Sigma-Aldrich) and quantified by Bicin Choninic Acid (BCA) protein assay kit (Thermo). The Western blot was performed according to standard procedures. The following antibodies were used: EphA8 (Abcam, USA), TGFβ1, TGFβR1, smad2, smad3 and smad4 (Cell Signaling Technology, Beverly, MA, USA); β-actin (Proteintech, USA) was used as loading control. The blots were incubated with goat anti-rabbit or anti-mouse secondary antibodies (Bioss, Beijing, China). The proteins were visualized using a chemiluminescence method (ECL Plus Western Blotting Detection System; Amersham Biosciences, Foster City, CA, USA). The bands were quantified by ImageJ software.
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2

Comprehensive Cell Signaling Assays

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We used antibodies against total SMAD2 (D43B4, #5339), pSMAD2 (Ser465/467, 138D4, #3108), cleaved Caspase 7 (#9491), TGFβR1 (#3712) and TGFβR3 (#2519) from cell signaling, GAPDH (#G9545) from Sigma-Aldrich, Actin (#A5316) from Thermo Fisher, TGFβR3 from Santa Cruz Biotechnology (#sc-17792), and ACTRV2B from Abcam (#ab76940). Recombinant human TGFβ 1, GDF3, GDF8, GDF11, and activin A were obtained from Peprotech and stored at −80 °C in 4 mM HCl, 1 mg/mL bovine serum albumin (TGFβ, GDF8, GDF11) or 1 mg/mL bovine serum albumin (GDF3, activin A). Gefitinib (EGFRi, used at 10 µM) and Selumetinib (MEKi, used at 1 µM) were purchased from Sellekchem, LY294002 (PI3Ki, used at 50 µM) from Alexis Biochemicals and Palbociclib (CDK4/6i, used at 10 µM) from MedchemExpress. Inhibitors were diluted in dimethyl sulfoxide (DMSO) and stored at −20 °C.
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3

Investigating TGF-β Signaling Pathway

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Antibodies to pSMAD2, SMAD2, pSMAD3, TGFΒR1, c-JUN, pERK1/2 ERK1/2 and GAPDH (all from Cell Signaling), SMAD3 (Invitrogen), TGFBR1 (V22), and SARA (Santa Cruz biotechnology), firefly luciferase (Millipore), Flag-HRP (Sigma), His-tag-HRP (clone H3; Invitrogen), and His-tag (clone H8; Millipore), ZAK monoclonal antibody MO3 (clone 3G5; Abnova) and ZAK polyclonal antibody was from Novus Biologicals. The HRP-conjugated secondary antibodies were from Jackson ImmunoResearch. Recombinant human TGF-β1 was obtained from HumanZyme, Alkaline phosphatase was purchased from New England Biolabs (NEB). TGFΒR1 inhibitors SB-431,542 and SD-208 were obtained from Cayman Chemical and D-Luciferin from Xenogen Corp. ZAK siGENOME Smart Pool siRNA as well as non-silencing siRNA (NSS) were obtained from GE-Dharmacon. The small molecular weight inhibitor of ZAK (DHP-2) was provided by Laura J Bloem from Eli Lilly [14] (link).
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4

Comprehensive Western Blot Analysis Protocol

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Western blot analysis was performed as previously described 21 (link), tissues and cells were washed with PBS, and lysed with RIPA lysis buffer including protease lysis inhibitor (Roche USA) and phosphatase inhibitor (Roche USA). A BCA protein assay kit (Thermo Scientific, USA) was used to measure protein concentration. 30ug protein extract was separated with a 10% SDS-polyacrylamide gel and transferred to a PVDF membrane (microwell). The membrane was blocked with TBST buffer containing 5% skim milk at 37 °C for 2 hours, incubated with primary antibody at 4 °C overnight, and incubated with peroxidase-conjugated secondary antibody for 2 hours. The signal was detected using ECL kit (Cell Signaling Technology, 12757) and photographed. Bands were quantified using gray-scale analysis software (Bio-Rad). GAPDH expression is used as a loading control to standardize the expression of other proteins. The main antibodies are as follows: anti-ADNP (1: 1000, Proteintech, USA), anti-GAPDH, N-Cadherin, Vimentin, Snail, E-Cadherin, β- Catenin, Claudin-1, TGF-β, TGF-βR1, Smad2/3, p-Smad2/3 (1: 1000, Cell Signaling Technology, USA). The secondary antibodies are as follows: HRP-goat anti-rabbit Ig G, HRP-goat anti-mouse Ig G (1: 5000, Cell Signaling Technology, USA).
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