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5 protocols using rocaglamide a

1

DMD-Modified Pat A Purification

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DMD (desmethyl, desamino)-modified Pat A was a gift from J. Lui (Johns Hopkins, Baltimore, MD). AS, CZ, doxycycline, rocaglamide A, puromycin, tetracycline, TG EM, sorbitol, glucose-free DMEM, glucose, and Biotin-isox were obtained from Sigma-Aldrich. Zeocin was obtained from Life Technologies. C-Terminal biotinylated USP10 peptides were obtained from GeneScript.
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2

Synthesized Compounds for Cellular Research

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Fluorizoline and compound 2a were synthesized as described in [1 (link)]. Thapsigargin, ISRIB, antimycin A, rocaglamide A, MnTBAP, and EGTA/AM (EGTA) were from Sigma-Aldrich (Saint Louis, MO, USA) ATP was from Roche (Basel, Switzerland). BAPTA/AM was from Abcam (Cambridge, UK). IN-8 and SB203580 were from Calbiochem (Merck-Millipore, Darmstadt, Germany).
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3

Purification of Recombinant Proteins

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Saporin from Saponaria officinalis seeds and Rocaglamide A were obtained commercially from Sigma. Recombinant hexahistidine-tagged fusions of BLF1 and eIF4A encompassing amino-acids 20-406 were purified using Ion Metal Affinity Chromatography on TALON-Cobalt (Clontech, Fremont, CA, USA) and S200 gel filtration (GE Healthcare, Little Chalfont, UK) as described previously [5 (link)].
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4

Virus Infection and Stress Granule Assay

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HeLa, 293A, 293T, Huh7, BHK-21, and Vero cells were cultured in Dulbecco’s modified Eagle’s medium supplemented with 10% fetal calf serum, 100 U/ml penicillin, and 100 μg/ml streptomycin at 5% CO2 and 37 °C. JEV AT31 and DENV 2 NGC strains (ATCC VR-1584) were cultured in 293A and BHK-21 cells, respectively. DBeQ (Sigma), Eer1 (Sigma), MDBN (StressMarq Biosciences), and rocaglamide A (Sigma) were dissolved in dimethyl sulfoxide. The culture medium of mock-treated cells contained the highest inhibitor concentration used in the respective assay. To induce the formation of SGs, the cells were cultured in a growth medium containing 100 μM sodium arsenite. The siRNAs, plasmids, and antibodies are listed in the Supplemental Information (Tables S1–S3). Virus titration was performed with a focus forming assay as described (46 (link)). For the infection study, viruses were inoculated at a multiplicity of infection of 0.3 for propagation and 1.0 for imaging experiments, including the quantification of SGs.
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5

Sterols and Bioactive Compounds Characterization

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Sterols, 7-α-aminocholesterol, cholesterol, 6-ketocholestanol and rocaglamide A were purchased from Sigma-Aldrich (St. Louis, MO, USA) under the references R207578, C3045, K1250 and SML0656, respectively. The structures of the compounds used are shown in Figure 1. The compounds were dissolved in dimethyl sulfoxide (DMSO; Sigma-Aldrich, St. Louis, MO, USA) to make stock solutions.
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