The largest database of trusted experimental protocols

9 protocols using paav flex tdtomato

1

Midbrain Dopaminergic Neuron-Astrocyte Co-culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultures of midbrain dopaminergic neurons on top of cortical astrocytes were made from P1-P2 Wistar rats or DAT-IRES-Cre mice (Jackson Laboratory)36 (link). Briefly, tissue was dissected from the ventral midbrain and digested in a papain solution oxygenated with a carbogen (95% O2 + 5% CO2) at 37 °C for 30 min. The digested tissue was brought to a single cell suspension by trituration through pipette tips of increasingly smaller sizes and centrifuged at 500 g for 10 min. The neurons were resuspended in a prewarmed neuron medium (Neurobasal A (10888022, Gibco) with 1% GlutaMAX (35050061, Gibco), 2% B-27 plus (A3582801, Gibco), 200 µM ascorbic acid, 500 µM kynurenic acid, and 0.1% Pen-Strep solution (P0781, Sigma)).
The cells were plated in neuron medium in six-well plates on a monolayer of glia cells grown on poly-d-lysine coated coverslips (⌀ = 25 mm). Two hours after plating neurons, rat glial cell-derived neurotrophic factor (SRP3239, Sigma) was added for a final concentration of 10 ng/mL. The cultures were used for experiments 14–21 days after the neurons were plated out. The neurons obtained from DAT-IRES-Cre mice were transduced 5 days post dissection with pAAV-FLEX-tdTomato (Addgene).
+ Open protocol
+ Expand
2

Versatile AAV Viral Vector Constructs

Check if the same lab product or an alternative is used in the 5 most similar protocols
AAV1-CaMKII-Cre was obtained from the University of Pennsylvania Viral Vector Core (Cat#AV-1-PV2396). AAV1-CAG-FLEX-GFP and AAV1-CAG-FLEX-tdTomato were obtained from Addgene (#51502-AAV1, #51503-AAV1). pAAV-FLEX-GFP (Addgene #28304) and pAAV-FLEX-tdTomato (Addgene #28306) were gifts from Edward Boyden (Massachusetts Institute of Technology). AAVDJ/8-CAG-FLEX-tdTomato and AAVDJ/8-CAG-FLEX-GFP were produced with pAAV2-1 and purified as described previously [38 (link), 39 (link)].
+ Open protocol
+ Expand
3

CRISPR-Cas9 Plasmid Constructs

Check if the same lab product or an alternative is used in the 5 most similar protocols
For a complete list of constructs, see Supplementary Table 1. pSpCas9(BB)-P2A-GFP (PX458) (Addgene plasmid # 48138)65 (link), PX551(Addgene plasmid # 60957)66 (link), and pX330-U6-Chimeric_BB-CBh-hSpCas9 (Addgene plasmid # 42230)65 (link),66 (link) were a gift from Feng Zhang. CAPZB2-TwinStrepII was a gift from Peter Barr-Gillespie (Addgene plasmid # 83194). pAAV-FLEx-tdTomato was a gift from Edward Boyden (Addgene plasmid # 28306). All constructs generated in the Soderling lab were validated with sequencing (Eton).
+ Open protocol
+ Expand
4

Retroorbital Viral Vector Injection

Check if the same lab product or an alternative is used in the 5 most similar protocols
For PHP.eB injections, mice were anesthetized with 3% isoflurane and retro-orbitally injected with 10 μl of the following viruses: pAAV-FLEX-tdTomato (8×1012 vg/ml, Addgene #: 28306), PHP.eb-GFP (8×1012 vg/ml, Addgene #: 37825). Mice were allowed to recover for 4 weeks post-surgery to allow for proper viral spread, and brains were collected and processed for experiments.
+ Open protocol
+ Expand
5

Diverse AAV Virus Production for Neuroscience

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following AAV (adeno-associated virus) viruses were produced at the Gene Therapy Center Vector Core at the University of North Carolina Chapel Hill: AAV-cFos-hChR2(H134R)-EYFP-Pest-no-WPRE, AAV-hSyn-EYFP, AAV8-hSyn-DIO-hM3D(Gq)-mCherry, and pAAV-EF1a-DIO-mCherry (UNC Vector Core, USA). The AAV5-Syn.Flex.GCaMP6s virus was obtained from the Penn Vector Core (USA). pAAV-hSyn-DIO-hM4D(Gi)-mCherry, pAAV-hSyn-DIO-mCherry, and pAAV-FLEX-tdTomato (produced with a retrograde serotype AAVrg) were obtained from Addgene (USA).
+ Open protocol
+ Expand
6

Endothelial-Specific PICALM Rescue in AD Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Endothelial specific rescue of PICALM was achieved by adeno-associated viral delivery of a Cre-dependent expression cassette (Flex-Picalm) to 5 month old APPsw/0; Picalm+/−; Tie2-Cre mice. The strategy was first validated with AAV-Flex-tdTomato virus (100 nl, 5x1012 GC/ml) and AAV-synapsin-GFP virus (20 nl, 5x1012 GC/ml) that were injected simultaneously into the hippocampus. AAV-Flex-Picalm construct was generated by cloning the coding region of mouse Picalm gene into the pAAV-FLEX-tdTomato (Addgene, Plasmid #28306) to replace the tdTomato. AAV-Flex-Picalm viruses were packaged by Penn Vector Core (6x1012 GC/ml) and 100 nl was used for each injection. The HBD mutant AAV-DJ/8 serotype (Cell Biolabs) was chosen for its high in vivo transduction efficiency and vascular tropism54 .
+ Open protocol
+ Expand
7

Endothelial-Specific PICALM Rescue in AD Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Endothelial specific rescue of PICALM was achieved by adeno-associated viral delivery of a Cre-dependent expression cassette (Flex-Picalm) to 5 month old APPsw/0; Picalm+/−; Tie2-Cre mice. The strategy was first validated with AAV-Flex-tdTomato virus (100 nl, 5x1012 GC/ml) and AAV-synapsin-GFP virus (20 nl, 5x1012 GC/ml) that were injected simultaneously into the hippocampus. AAV-Flex-Picalm construct was generated by cloning the coding region of mouse Picalm gene into the pAAV-FLEX-tdTomato (Addgene, Plasmid #28306) to replace the tdTomato. AAV-Flex-Picalm viruses were packaged by Penn Vector Core (6x1012 GC/ml) and 100 nl was used for each injection. The HBD mutant AAV-DJ/8 serotype (Cell Biolabs) was chosen for its high in vivo transduction efficiency and vascular tropism54 .
+ Open protocol
+ Expand
8

Stereotaxic Viral Injections in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were anesthetized using isoflurane (Cp-pharma, 1.5–2%) and placed in a stereotaxic setup (Kopf Instruments). Body temperature was maintained using a heating pad at 37°C, and an analgesic was injected subcutaneously (5 mg/kg, Rimadyl, Zoetis). Viruses (pAAV-FLEX-tdTomato (Addgene), rAAV5-hsyn-EYFP (UNC GTC vector core, United States)), or CTB (cholera toxin subunit B, Invitrogen) were injected into the MTN (AP −2.65, ML ± 0.95, DV −5) using glass pipettes (#708707, BLAUBRAND intraMARK).
+ Open protocol
+ Expand
9

Midbrain Dopaminergic Neuron-Astrocyte Co-Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultures of midbrain dopaminergic neurons on top of cortical astrocytes were made from P1-P2
Wistar rats or DAT-IRES-Cre mice (Jackson Laboratory) as previous described 36 . They were plated in 6-well plates on poly-D-lysine coated coverslips (⌀ = 25 mm) using a modified serum-free medium (Neurobasal A (10888022, Gibco) with 1% GlutaMAX (35050061, Gibco), 2% B-27 plus (A3582801, Gibco), 200 µM ascorbic acid, 500 µM kynurenic acid and 0.1% Pen-Strep solution (P0781, Sigma).
Two hours after plating neurons, rat glial cell derived neurotrophic factor (SRP3239, Sigma) was added for a final concentration of 10 ng/mL. The cultures were used for experiments 14-21 days after the neurons was plated out. The neurons obtained from DAT-IRES-Cre mice were transduced 5 days post dissection with pAAV-FLEX-tdTomato (Addgene).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!