The largest database of trusted experimental protocols

Inverted sp5 confocal microscope

Manufactured by Leica Microsystems
Sourced in Germany

The Leica Inverted SP5 confocal microscope is a high-performance imaging system designed for advanced microscopy applications. It features a fully automated, inverted optical design that allows for the observation and analysis of samples from below. The microscope is equipped with a comprehensive range of laser excitation sources, ensuring flexibility in fluorescence imaging. The SP5 confocal system provides high-resolution, three-dimensional imaging capabilities, enabling researchers to capture detailed visualizations of their samples.

Automatically generated - may contain errors

14 protocols using inverted sp5 confocal microscope

1

Confocal Microscopy Assay for PF4-Heparin Complex Uptake

Check if the same lab product or an alternative is used in the 5 most similar protocols
For confocal microscopy experiments, approximately 1 X 106 cells were allowed to adhere to fibronectin-coated glass coverslips for 2–3 hours. Thereafter, cells were washed with wash buffer containing phosphate buffered saline (PBS, Invitrogen/Life Technologies), 0.5% human serum albumin, 4 mg/mL IVIG and 0.1% Tween-20 and incubated with pre-formed hPF4 ± heparin in M199 media, for varying times at 37°C. To inhibit actin polymerization, cells were incubated with 5 μM cytochalasin D for 1 hour at 37°C along with labeled complexes and then incubated for 24 hours. To inhibit macropinocytosis, cells were pre-incubated with 0.1 mM amiloride in media for 15 minutes prior to addition of labeled complexes. After incubation with antigen, cells were washed and fixed with 4% paraformaldehyde and counterstained with one or more of the following labeled-antibodies: CD14 (monocyte marker), CD1a (dendritic cell marker), KKO (anti-hPF4/heparin monoclonal antibody, mAb), and DAPI (nuclear stain). Coverslips were mounted on slides with Fluoromount-G mounting medium, and examined and photographed with a Leica SP5 inverted confocal microscope using a 100X oil immersion lens (Leica Microsystems, version-LAS AF 2.6; Wetzlar, Germany), with digital zoom (2-10X) and accompanying Leica LAS AF 2.6 software (Buffalo Grove, IL).
+ Open protocol
+ Expand
2

Multimodal Imaging of Fluorescent Embryos

Check if the same lab product or an alternative is used in the 5 most similar protocols
An SP5 inverted confocal microscope (Leica Microsystems) was used to image fluorescent transgenic embryos, double fluorescence in situ hybridization and TUNEL assays. Fluorescein and GFP were excited by a 488-nm laser, DsRed and Cy3 by a 543-nm laser, Strepavidin-647 by a 633-nm laser and 4,6-diamidino-2-phenylindole (DAPI) by a 405-nm laser. Sequential images were overlaid using ImageJ (NIH) or Imaris (Bitplane). A Zeiss AxioZoom.V16 microscope was used to image the immunohistochemistry samples using the AxioVision software 4.8. Visible-light imaging for sections or WISH was performed on a BX-51 Olympus or Leica MZ16 microscope (Leica FireCam Software 3.4.1).
+ Open protocol
+ Expand
3

Immunostaining of Centrosomes in Cells and Embryos

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells and embryos were fixed in 4% PBS–paraformaldehyde (PFA)
(15710, Electron Microscopy Sciences) for 20 min at room temperature and
subsequently washed twice with 0.1% Tween–PBS. To stain centrosomes,
cells and embryos were fixed in ice-cold methanol for 5 min at 4 °C.
Peremeabilization was done in PBS containing 0.3% Triton X-100 and 0.1 M glycine
for 30 min at room temperature. Cells were incubated with primary antibodies
(Supplementary Table
2
) at 4 °C overnight, followed by incubation with
fluorescently conjugated Alexa Fluor secondary antibodies (Thermo Fisher
Scientific) for 2 h at room temperature (Supplementary Table 2). Both primary and secondary
antibodies were diluted in 1% BSA, 0.1% Tween–PBS.
Images were acquired on an inverted SP5 confocal microscope (Leica
Microsystems) with a Leica HC PL APO 1.4 NA 63× oil objective or on an
inverted SP8 confocal microscope (Leica Microsystems) with a Leica HC PL APO CS2
1.4 NA 63× oil objective or a Leica Fluotar VISIR 0.95 NA 25 x water
objective.
+ Open protocol
+ Expand
4

Imaging and Analysis of Fixed Biological Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The images of the fixed samples were acquired using inverted SP5 confocal microscope (Leica Microsystems, Manheim, Germany) and Leica 1.3 NA 40X oil (HC PL APO), Leica 1.4 NA 63X oil (HC PL APO) and Leica 1.3 NA 63x glycerol (HCX PL APO) objectives. The images were processed using Fiji (http://fiji.sc), Chimera (https://www.cgl.ucsf.edu/chimera/) and MovIT visualization software (BioEmergences, http://bioemergences.iscpif.fr/)33 (link).
+ Open protocol
+ Expand
5

Immunostaining of Centrosomes in Cells and Embryos

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells and embryos were fixed in 4% PBS–paraformaldehyde (PFA)
(15710, Electron Microscopy Sciences) for 20 min at room temperature and
subsequently washed twice with 0.1% Tween–PBS. To stain centrosomes,
cells and embryos were fixed in ice-cold methanol for 5 min at 4 °C.
Peremeabilization was done in PBS containing 0.3% Triton X-100 and 0.1 M glycine
for 30 min at room temperature. Cells were incubated with primary antibodies
(Supplementary Table
2
) at 4 °C overnight, followed by incubation with
fluorescently conjugated Alexa Fluor secondary antibodies (Thermo Fisher
Scientific) for 2 h at room temperature (Supplementary Table 2). Both primary and secondary
antibodies were diluted in 1% BSA, 0.1% Tween–PBS.
Images were acquired on an inverted SP5 confocal microscope (Leica
Microsystems) with a Leica HC PL APO 1.4 NA 63× oil objective or on an
inverted SP8 confocal microscope (Leica Microsystems) with a Leica HC PL APO CS2
1.4 NA 63× oil objective or a Leica Fluotar VISIR 0.95 NA 25 x water
objective.
+ Open protocol
+ Expand
6

3D Quantification of Viral RNA in Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stained LN sections were imaged on an inverted SP5 confocal microscope (Leica Microsystems), and images were analyzed using Imaris software (Bitplane). Three-dimensional (3D) surfaces were constructed according to an absolute intensity threshold for fluorescent channels detecting either CD20 (B cell follicle), DAPI (all tissue), or the RNA-FISH probe (ZIKV/SIV RNA). Summed volumes of constructed 3D surfaces were then calculated. 3D surface volume overlap was determined manually. ZIKV/SIV RNA quantifications were normalized as a function of their total tissue volume (e.g., cubic micrometers of the RNA-FISH probe per cubic micrometer of DAPI).
+ Open protocol
+ Expand
7

Time-lapse Imaging of Mouse Embryonic Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Time-lapse images of mES cells were acquired on an inverted SP5 confocal
microscope (Leica Microsystems) with a Leica HC PL FLUOTAR 0.5 NA 20.0×
dry objective. Cells were imaged in a humidified chamber with 21% O2and 5% CO2. Images were taken at intervals of 30 min with a
z step of 4 μm.
+ Open protocol
+ Expand
8

Visualizing Nodulation Dynamics in Composite Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Composite plants transformed with the pMtARF3:GFP-GUS or pMtARF4a:GFP-GUS were transferred to square petri dishes (12 cm × 12 cm) containing slanted agar-Fahraeus medium. GFP fluorescence of roots was visualized with an inverted microscope (Olympus IX51) using UV light with appropriate filters for GFP. For detection of GFP and RFP fluorescence in S. meliloti inoculated roots and in nodules, confocal microscopy was performed at 5 and 9 dpi with an S. meliloti strain expressing RFP (Tian et al., 2012 (link)) using an inverted SP5 confocal microscope (Leica Microsystems). GFP and RFP were excited using 488- and 543-nm lasers, and emissions were collected from 498 to 552 nm and from 578 to 626 nm, respectively. Images were processed with the LAS Image Analysis software (Leica Microsystems).
+ Open protocol
+ Expand
9

Imaging and Analysis of Fixed Biological Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The images of the fixed samples were acquired using inverted SP5 confocal microscope (Leica Microsystems, Manheim, Germany) and Leica 1.3 NA 40X oil (HC PL APO), Leica 1.4 NA 63X oil (HC PL APO) and Leica 1.3 NA 63x glycerol (HCX PL APO) objectives. The images were processed using Fiji (http://fiji.sc), Chimera (https://www.cgl.ucsf.edu/chimera/) and MovIT visualization software (BioEmergences, http://bioemergences.iscpif.fr/)33 (link).
+ Open protocol
+ Expand
10

Time-lapse Imaging of Mouse Embryonic Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Time-lapse images of mES cells were acquired on an inverted SP5 confocal
microscope (Leica Microsystems) with a Leica HC PL FLUOTAR 0.5 NA 20.0×
dry objective. Cells were imaged in a humidified chamber with 21% O2and 5% CO2. Images were taken at intervals of 30 min with a
z step of 4 μm.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!