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7 protocols using macs neural tissue dissociation kit p

1

Isolation and Culture of Mouse Oligodendrocyte Precursor Cells

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Mouse OPCs were isolated from P6–P9 pups, as described previously (Watkins et al., 2008 (link); Swire and ffrench-Constant, 2019 (link)). Ear clips were taken for subsequent genotyping. Briefly, cerebral cortices were dissected, diced, and dissociated into single-cell suspensions gently using MACS Neural Tissue Dissociation Kit P (catalog #130–092-628, Miltenyi Biotec). Cells were resuspended in 0.2% BSA, insulin, and PBS, and were transferred to treated tissue culture dishes coated with BSL1 (catalog #L-1100, Vector Laboratories) twice for 15 min. Cell solutions were then transferred to dishes coated with anti-PDGFRα (CD140a) for 45 min. Solutions were aspirated, and attached cells were washed twice with media and removed with a cell scraper. All collected cells were added to vented T75 flasks and grown at 37°C with 7.5% CO2. Cells were grown in myelination media containing PDGF and neurotrophin-3, were changed every 2 d, and were supplemented daily with PDGF. After 7–9 d, confluent flasks were washed with PBS and then detached using TrypLE for 10 min at 37°C. Solutions were centrifuged at 1000 rpm for 5 min, resuspended, and counted using a hemocytometer.
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2

Single-Cell Analysis of Xenografts

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Cell cultures were dissociated using Accutase® (Sigma-Aldrich). Xenografts were dissociated with MACS Neural Tissue Dissociation Kit (P) (Miltenyi) following the manufacturers’ instructions. Single cells were resuspended in HBSS, 2% FBS, 10 mM HEPES buffer (100 µl per test). Cells were incubated with the IR-LIVE/DEAD® Fixable Dead Cell Stains (Invitrogen; 1 µg ml−1) and appropriate preconjugated antibodies for 30 min at 4 °C in the dark (Supplementary Table 3). For cell cycle analysis in viable cells, cells were prestained with Hoechst 33342 (5 µg ml−1, Bisbenzimide, Ho342; Sigma) at 37 °C before antibody staining37 (link). Data acquisition was performed on a FACS AriaTM SORP cytometer (BD Biosciences) and ImageStream imaging cytometer (Amnis). Data acquisition and analysis were done for FACSAria with DIVA software (BD Bioscience); and INSPIRE and IDEAS® for ImageStream. Histograms were prepared with the FlowJo software.
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3

Flow Cytometry Analysis of Xenograft Cells

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Flow cytometry experiments were performed as described before [16 (link), 17 (link)]. Briefly, xenografts derived in eGFP-expressing mice were minced with scalpels and dissociated with MACS Neural Tissue Dissociation Kit (P) (Miltenyi, 130-092-628, Lund, Sweden) following the manufacturer’s instructions. Single cell suspensions were incubated with Hoechst 33342 (5 µg/ml, Bisbenzimide, Ho342; Sigma) at 37 °C in pre-warmed DMEM, containing 2 % FBS, 10 mM HEPES pH 7.4 and DNAse I (10 µg/ml; Sigma) at 1 × 106 cells/ml for 120 min. After washing, cells were resuspended in ice-cold HBSS 2 % FBS and 10 mM HEPES pH 7.4 buffer (100 µl/test). Prior to flow cytometry, cells were incubated with LIVE/DEAD® Fixable Dead Cell Stains (Life Technologies) and appropriate preconjugated antibodies for 30 min at 4 °C in the dark (antibodies are listed in Supplementary Table II). Data acquisition was performed on a FACS Aria™ SORP cytometer (BD Biosciences, San Jose, CA, USA) and the Hoechst signal was excited with the UV laser. Data acquisition and analysis were done with DIVA software (BD Biosciences). Histograms were prepared with the FlowJo software.
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4

Isolation and Culture of Murine Microglia

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Adult C57BL/6 mice were perfused with ice-cold Hank’s Balanced Salts Solution (HBSS) and brains kept in cold HBSS. After removal of cerebellum and meningeal layers, brains were diced, and enzymatically processed using as per manufacturer’s instructions using a MACS Neural Tissue Dissociation Kit (P) (Miltenyi Biotech, Bisley, UK). Brains were then mechanically homogenised using a Dounce homogeniser, and myelin removed from the resulting cell suspension using a one-step 30% Percoll gradient31 (link). Microglia were then isolated using magnetic CD11b + beads (Milteny Biotech), and seeded on poly-L-lysine coated plates (~1.7 × 105 cells/ml), and maintained with DMEM (with 10% fetal bovine serum and 1% penicillin streptomycin) supplemented with 10 ng/ml of recombinant mouse M-CSF (R&D systems, Abingdon UK), and 50 ng/ml of recombinant human TGF-β. Media was changed at 3 days, and cells treated after 7 days in culture.
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5

Quantifying Proliferating Cells in Electroporated Brain

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Cortex of electroporated brain were dissociated using MACS® Neural Tissue Dissociation Kit (P) (Miltenyl Biotec) and fixed with 4%PFA for 20 min. For EdU detection, Click-iT™ EdU Alexa Fluor™ 647 Flow Cytometry Assay Kit (ThermoFisher C10424) was used, followed by GFP and Vybrant DyeCycle Violet (ThermoFisher V35003) staining. For sorting, 50,000 cells were sorted with Vybrant DyeCycle Violet (405nm), EdU (640 nm), and GFP (488nm) using FACSJazz Cell Sorter (BD). Each sample from cortex from 2~3mice and sorting was repeated four to six times. Analyses were done using FlowJo_v10.3 (FlowJo, LLC) (Yoon et al., 2017a ).
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6

FACS Analysis of PDOX Brain Tumors

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Animals were perfused with ice-cold PBS. PDOX brains were dissected into separate zones when specified: tumor core (cellular tumor, including pseudopalisading/hypoxic zone if present), invasive zone (corpus callosum and top left hemisphere, P3) and distant zone (left hemisphere, bottom hemisphere, P3 & P13). P8 PDOX was not dissected, due to its very invasive nature. PDOX tumors and control mouse brains were dissociated with MACS Neural Tissue Dissociation Kit (P) (Miltenyi) following the manufacturers’ instructions. Single cells were resuspended in ice-cold HBSS, 2% FBS, 10mM HEPES buffer (100 μl/test) flow buffer. Fc receptors were blocked with CD16/CD32 antibody for 30 min at 4°C. Cells were incubated with the appropriate pre-conjugated antibodies for 30 min at 4°C in the dark (Table S2). Non-viable cells were stained with Hoechst (0.1μg/ml, Sigma). Data acquisition was performed at 4°C on a FACS Aria SORP cytometer (BD Biosciences) fitted with a 632 nm (30 mW) red laser, a 355 (60 mW) UV laser, a 405 nm (50 mW) violet laser and a 488 nm (100 mW). Data were analyzed with FlowJo software (version 10.8.1).
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7

Enzymatic Dissociation of Neural Tissue

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Tissue pieces were enzymatically dissociated for 20 to 30 min at 37°C using MACS Neural Tissue Dissociation Kit P (Miltenyi Biotec) according to the manufacturer’s instructions. Cells were mechanically suspended using wide-tipped, fire-polished Pasteur pipettes (Thermo Fisher Scientific), followed by P1000 pipettes (Gilson). Cell suspensions were filtered to new 2-ml DNA LoBind tubes (Eppendorf) through 40-μm PluriStrainer Mini (PluriSelect) prewet with Hank’s balanced salt solution (1×) without CaCl2/MgCl2/pH indicator (Gibco). Cells were centrifuged (Spectrafuge 24D, Labnet) twice for 5 min at 1000 rpm, and cell pellets were resuspended in 40 μl of phosphate-buffered saline (PBS) (pH 7.4) (1×) without CaCl2/MgCl2 (Gibco) containing 0.04% bovine serum albumin (Sigma-Aldrich). Cell concentration from homogeneous suspensions was measured, and cell death was estimated twice using trypan blue 0.4% stain (Thermo Fisher Scientific): first, on an automatic cell counter (Countess II FL, Thermo Fisher Scientific) and, second, using a hemocytometer (BLAUBRAND Neubauer, BRAND) on an inverted microscope (Leica DM IL). Debris-free suspensions with cell viability over 90% were used immediately for single-cell isolation.
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