The largest database of trusted experimental protocols

9 protocols using nucblue fixed cell readyprobes reagent dapi

1

EIPA Inhibition of VSV*ΔG-Luc(HTNV-G) Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Confluent monolayers of A549 cells were either treated with 50 μM EIPA for 30 min (25 wells) or untreated (25 wells), followed by infection with VSV*ΔG-Luc(HTNV-G) in the presence of the inhibitor. After 16 h of incubation, cells were washed with medium, fixed with 2% PFA, and the nuclei were stained with NucBlueTM Fixed Cell ReadyProbesTM Reagent (DAPI) following manufacturer’s instruction (ThermoFisher, Waltham, MA, United States). Data were acquired and analyzed with MetaXpress and GraphPad Prism 7 softwares.
+ Open protocol
+ Expand
2

Fixation and Nuclear Staining of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were fixed with 10% buffered formalin (cat. no. SF1004, Thermo Fisher Scientific, Waltham, MA, United States) and stained with 5 μM SYTOX orange (cat. no. S34861, Thermo Fisher Scientific, Waltham, MA, United States) and NucBlueTM Fixed Cell ReadyProbesTM Reagent (DAPI, cat. no. R37606, Thermo Fisher Scientific, Waltham, MA, United States) as described (Minden-Birkenmaier et al., 2020 (link)). Briefly, samples were sequentially incubated with each stain for 5 min at room temperature. Three washes with 1 × phosphate-buffered saline for 5 min each were performed between each step. Cells and NETs were visualized on an Olympus BX43 fluorescent microscope.
+ Open protocol
+ Expand
3

Immunocytochemistry Protocol for Fixed Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded in 8-well imaging chambers at a density of 30K cells/chamber and grown for 48 hours with daily feeding. After 48 hours, cells were washed once in PBS and fixed in 4% paraformaldehyde (20 min, RT). Fixed cells were washed in PBS three times and incubated in primary antibody ICC antibody diluent [0.1% Saponin (filtered) and 1% BSA in PBS] overnight at 4°C. Wells were washed three times with PBS, followed by 3 × 5 min washes with PBS, then covered with aluminum foil and incubated with secondary antibody diluted in ICC antibody diluent in RT. Three PBS wash and 3 × 5 min washes in PBS were repeated, and cells were stored in PBS with NucBlue Fixed Cell ReadyProbes Reagent (DAPI) (ThermoFisher, cat no: R37606) in 4°C until imaging. Confocal images were acquired using a Zeiss LSM 880 confocal microscope using the 63x oil objective.
+ Open protocol
+ Expand
4

Quantifying Canalicular MRP2 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
iHEPs were treated +/−20 nM staurosporine (Generon) for 2 h, after which the cells were fixed in 4% PFA (Sigma-Aldrich) in PBS for 15 min. The fixed cells were then blocked for 1 h in blocking buffer (0.2% Triton X-100 (Sigma-Aldrich), 3% Donkey-Serum (Sigma-Aldrich) and 1% BSA (Sigma-Aldrich) in PBS) at room temperature. Next, the cells were stained with a 1:25 dilution of human MRP2 primary antibody (Abcam; ab3373) in blocking buffer overnight at 4 °C. The following day, the cells were stained with a 1:500 dilution of AlexaFluor 555 donkey anti-mouse antibody (Invitrogen; A-31570) in PBS for 2 h at room temperature, followed by a 5-min incubation with NucBlue Fixed Cell ReadyProbes Reagent (DAPI; Thermo Fisher Scientific) at room temperature. Cell nuclei (blue) and MRP2 expression at the canalicular membrane (red) were captured in images taken on an LSM 880 confocal microscope (ZEISS). Images were analysed using Fiji45 (link) as above to determine integrated density of MRP2 staining at the canalicular membrane, total canalicular area, average canalicular area and canalicular count. The statistical significance of experimental data was assessed by Student’s test.
+ Open protocol
+ Expand
5

Immunocytochemistry (ICC) Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded in 8-well imaging chambers at a density of 30K cells/chamber and grown for 48 h with daily feeding. After 48 h, cells were washed once in PBS and fixed in 4% paraformaldehyde (20 min, RT). Fixed cells were washed in PBS three times and incubated in primary antibody ICC antibody diluent [0.05% Saponin (filtered) and 1% BSA in PBS] overnight at 4°C. Wells were washed three times with PBS, followed by 3×5 min washes with PBS, then covered with aluminum foil and incubated with secondary antibody diluted in ICC antibody diluent in RT. Three PBS wash and 3 × 5 min washes in PBS were repeated, and cells were stored in PBS with NucBlue Fixed Cell ReadyProbes Reagent (DAPI) (ThermoFisher, cat no: R37606) in 4°C until imaging. Confocal images were acquired using a Zeiss LSM 880 confocal microscope using the 63x oil objective.
+ Open protocol
+ Expand
6

Antibody and Inhibitor Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rabbit anti-Akt (pan), rabbit anti-phospho Akt (T308), rabbit anti-SAPK/JNK, rabbit antiphospho SAPK/JNK (T183/Y185), rabbit anti-p38, rabbit anti-phospho p38 (T180/Y182), rabbit anti-p44/42 MAPK (ERK1/2), and rabbit anti-phospho p44/42 MAPK (T202/Y204) were from Cell Signaling. Other antibodies were purchased as follows; rabbit anti-nonmuscle myosin IIA (Abcam), mouse anti-Myh10 (myosin IIB, SantaCruz Biotechnology), mouse anti-E-cadherin (BD Transduction Laboratories), and rabbit anti-β-actin (MBL Life science). Acti-stain555 were from Cytoskeleton, Inc. NucBlue Fixed Cell ReadyProbes Reagent (DAPI) were from ThermoFisher Scientific. All of the inhibitors were from Sigma-Aldrich and used at the following concentrations: z-VAD (50 μM), blebbistatin (50 μM), LY294002 (25 μM), SP600125 (10 μM), PD98059 (10 μM), SB202190 (10 μM).
+ Open protocol
+ Expand
7

Prostate Tissue Immunofluorescence Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Prostate tissues were fixed by 10% buffered formalin and embedded in paraffin. H&E staining and immunofluorescence staining were performed using 5μm sections. For hematoxylin and eosin staining, sections were processed as described previously (Choi et al., 2012 (link)). For immunostaining, sections were processed as described previously (Choi et al., 2012 (link)) and incubated with primary antibodies in 3% normal goat serum (Vector Laboratories, Burlingame, CA) at 4°C overnight. Information for the antibodies is listed in Key Resource Table. Slides then were incubated with secondary antibodies labeled with fluorophores (diluted 1:250 in 3% normal goat serum). Sections were counterstained with NucBlue Fixed Cell ReadyProbes Reagent (DAPI) (Invitrogen, Waltham, MA). Immunofluorescence staining was imaged using a Nikon A1R confocal microscope (Nikon, NY, USA). Images of immunofluorescence staining were analyzed by Fiji ImageJ. Cell number was determined by using the count feature in the software.
+ Open protocol
+ Expand
8

Prostate Tissue Immunofluorescence Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Prostate tissues were fixed by 10% buffered formalin and embedded in paraffin. H&E staining and immunofluorescence staining were performed using 5μm sections. For hematoxylin and eosin staining, sections were processed as described previously (Choi et al., 2012 (link)). For immunostaining, sections were processed as described previously (Choi et al., 2012 (link)) and incubated with primary antibodies in 3% normal goat serum (Vector Laboratories, Burlingame, CA) at 4°C overnight. Information for the antibodies is listed in Key Resource Table. Slides then were incubated with secondary antibodies labeled with fluorophores (diluted 1:250 in 3% normal goat serum). Sections were counterstained with NucBlue Fixed Cell ReadyProbes Reagent (DAPI) (Invitrogen, Waltham, MA). Immunofluorescence staining was imaged using a Nikon A1R confocal microscope (Nikon, NY, USA). Images of immunofluorescence staining were analyzed by Fiji ImageJ. Cell number was determined by using the count feature in the software.
+ Open protocol
+ Expand
9

Immunofluorescent Staining of Fibroblasts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Treated cultured fibroblasts were seeded at a concentration of 5 × 104 cells/mL on Poly-L-Lysine-coated glass cover slips in a 12-well plate and allowed to grow overnight in growth media at 37 °C in a 5% CO2 incubator. Cells were then fixed in 4% paraformaldehyde for 10 min and permeabilized with 0.1% Triton X-100 and blocked after brief washings in 5% donkey serum at room temperature for 1 h. Cells were briefly washed and treated with primary antibodies VLCAD (1:1000, Vockley Lab) and HADHA (1:100, Santa Cruz Biotechnology, Dallas, TX, USA) overnight at 4 °C. After brief washing with 1 X tris buffered saline, pH 7.4 with Tween 20, cells were incubated with the secondary antibodies donkey anti-rabbit Alexa Fluor 488 and donkey anti-mouse Alexa Fluor 594 (1:1000, Invitrogen, Waltham, MA, USA) for 1 h at RT. Nuclei were counterestained with NucBlue Fixed Cell ReadyProbes Reagent (DAPI; Invitrogen). The cover slips were then mounted using mounting media before imaging. All images were taken on a Zeiss LSM710 Confocal microscope using 63× magnification. Images were analyzed using ImageJ [43 (link)].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!