The largest database of trusted experimental protocols

Abi 7500 cycler detection system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI 7500 Cycler detection system is a real-time PCR instrument designed for quantitative gene expression analysis and genotyping. It utilizes a 96-well format and features a high-performance optical system for accurate and sensitive detection of fluorescent signals.

Automatically generated - may contain errors

3 protocols using abi 7500 cycler detection system

1

Quantitative Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Trizol extracted total RNA was used for cDNA synthesis employing a High Capacity cDNA Reverse Transcription kit (Applied Biosystems, Foster City, CA). SYBR green based Real-time quantitative PCR (qPCR) was performed in ABI 7500 Cycler detection system (Applied Biosystems) using gene- and species- specific primers (Table 2). β-actin was employed as a housekeeping gene, and a delta Ct method was employed to calculate relative mRNA expression14 (link),17 (link).

Primer sequences.

PrimerSequence
Human
Mfn2F-ATGCAGACGGAAAAGCACTT
R-ACAACGCTCCATGTGCTGCC
Mfn2 promoterF-TGCCCGATGAGTCACTTCAC
R-CAAGGGGCGAAAAACCAAGG
Mlh1F-CCTGCTCCCCGCGCTTTCTT
R-CGGGGAGGCTGTGCTTCTGC
Mlh1 promoterF-GTCATCCACATTCTGCGGGA
R-CTCTGCTGAGGTGATCTGGC
CytBF-ATGGTAGATGTGGCGGGTTT
R-TCTCCGATCCGTCCCTAACA
β-ActinF-AGCCTCGCCTTTGCCGATCCG
R-TCTCTTGCTCTGGGCCTCGTCG
Rat
Mfn2F-ACAAAGTTCTGCCATCTGGG
R-TGCTCATCCTGATGGAGGGC
Mfn2 promoterF-GTCTGCCCGATGAGTCACTT
R-AAACCAAGGGCGTGGAGTA
Mlh1F-AAGCATAAGCCATGTGGCCC
R-TTCCCGTACTCTTCACTGGG
Mlh1 promoterF- TTCCCGAGTAGAGGCGACC
R- AACCCAGGGGGGTGCTTGG
Dnmt1F-ACCTACCACGCCGACAT
R-AGGTCCTCTCCGTACTCCA
CytBF-CCCATTCATTATCGCCGCCC
R-GGTCTCCTAGTAGGTCTGGG
β-ActinF-CCTCTATGCCAACACAGTGC
R-CATCGTACTCCTGCTTGCTG
+ Open protocol
+ Expand
2

Quantitative Real-Time PCR Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gene transcripts were quantified by SYBR green-based, real-time quantitative PCR (qPCR) using the ABI 7500 Cycler detection system (Applied Biosystems, Foster City, CA, USA) and β-actin as the housekeeping gene.31 (link)
+ Open protocol
+ Expand
3

Molecular Profiling of Retinal Microvascular Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from retinal microvessels or HRECs using TRIzol reagent (Invitrogen, Carlsbad, CA). cDNA was synthesized using a High Capacity cDNA Reverse Transcription kit (Applied Biosystems, Foster City, CA). Quantitative real-time PCR (q-RTPCR) was performed using gene-specific primers (Table 2) by SYBR Green assay in ABI 7500 Cycler detection system (Applied Biosystems), and the specific products were confirmed by SYBR green single melt curve analysis. The results were normalized to the expression of the housekeeping gene β-actin and the relative fold change was calculated using delta Ct method [26 , 27 ].

Primer sequence

GeneSequence (5′-3′)
CBS

TCCCCACATCACCACACTGC

ATCATCCGCAGGCTGATGCG

MTHFR

GAAGTACGAGCTCCGGGTTA

AAGATGCCCCAAGTGACAG

CSE

AGGTTTCCTGCCACACTTCC

TATTCAAAACCCGAGTGCTGG

CYTB

TCACCAGACGCCTCAACCGC

GCCTCGCCCGATGTGTAGGA

DRP1

GAAGGAGGCGAACTGTGGGC

GCAGCTGGATGATGTCGGCG

MFN2

ATGCAGACGGAAAAGCACTT

ACAACGCTCCATGTGCTGCC

LC3

TGGTCAAGATCATCCGGCGC

GAAGCCGAAGGTTTCCTGGG

OPTN

GAGAAGGCTCTGGCTTCCAA

GTCATGGTTTCCAGGTCCTCTT

DNMT1AGTCCGATGGAGAGGCTAAG TCCTGAGGTTTCCGTTTGGC
β-ACTIN

AGCCTCGCCTTTGCCGATCCG

TCTCTTGCTCTGGGCCTCGTCG

CBS promoter (− 116 to + 64)GTGCTCTGCCACGAGACATTGTCACCTGGACGGATACATGGAAA
MTHFR promoter (− 406 to − 233)

CCAGCATCAAGTTCTAACCCACAA

ATCACCCTCCAGAGAAGGAACAG

+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!