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8 protocols using anti ki67 antibody

1

Immunohistochemical Analysis of Implanted Tumors

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Subcutaneously implanted tumours were harvested and embedded in paraffin for immunohistochemical analysis using the CD117 polyclonal rabbit immunostain (Dako Corporation, Carpinteria, CA) and anti-Ki67 antibodies (Novocastra Laboratories, Newcastle, UK). Terminal dUTP nick-end labelling (TUNEL) assays (with DAPI Fluorescein In Situ Apoptosis Detection Kit [Chemicon International, Temecula, CA] were performed according to the manufacturer’s instructions.
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2

Quantifying Growth Hormone Receptor and Cell Proliferation

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Growth hormone receptor (GHR) was detected by immunohistochemistry using an anti-GHR monoclonal antibody (Santa Cruz Biotechnology, CA, USA) in the ileum, cells, and tumor sections as previously described [18 (link)], and was measured using a semi-quantitative scoring system. Human IgG was used instead of primary antibody as a negative control. The staining intensity score of the cells was graded as negative (0), faint yellow staining (1), brown staining (2), or dark brown staining (3). The percentage of positive cells was graded as 0% (0), 0%–10% (1), 10%–50% (2), and 50%–100% (3). The GHR expression score was calculated by multiplying the two scores, and is indicated as arbitrary units. Ten microscopic fields (200x) were observed for each section.
Ki67 expression was assessed in the ileum and tumor sections with anti-Ki67 antibodies (Novo Castra Laboratories, UK) and then with a biotinylated goat anti-mouse antibody (Santa Cruz Biotechnology, CA, USA). Ten microscopic fields (200x) were observed for each section. The results are expressed as the percentage of Ki67 positive cells.
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3

Quantifying Ki-67 Expression in FFPE A549 Tumors

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Formalin-fixed paraffin-embedded (FFPE) tumor sections (5 μm) from A549 tumors were used for hematoxylin and eosin (H&E) staining and proliferation analysis with anti-Ki67 antibody (Leica Biosystems; Cat#: NCL-Ki-67p). Briefly, sections were deparaffinized, incubated overnight at 4°C with primary antibodies, washed, and incubated with secondary antibodies HRP Labelled Polymer Anti-Rabbit (Dako EnVision + System; Cat#: K4002) following the manufacturer's protocol. Slides were counterstained with hematoxylin counterstain and coverslips were mounted using non-aqueous mounting media. Images were scanned at 20× magnification using the Aperio Scanscope system.
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4

Quantifying Cell Proliferation and Apoptosis

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HASMCs or human EA.hy926 ECs were seeded onto 12-well plates (1×105 cells/1 ml/well) and incubated at 37°C in 5% CO2 for 24 h in the same conditioning medium, followed by 48 h-incubation with the indicated concentrations of Ucn1. Cells were fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) and stained with rabbit polyclonal anti-Ki-67 antibody (Leica Biosystems, Newcastle upon Tyne, UK), followed by anti-rabbit Alexa Fluor 488 (Life Technologies, Carlsbad, CA). Terminal deoxynucleotidyl transferase- mediated deoxyuridine triphosphate-biotin nick end labelling (TUNEL) staining was performed using an In Situ Apoptosis Detection Kit (Takara Bio, Otsu, Japan). Nuclei were visualized by 4′,6-diamidino-2-phenylindole (DAPI) staining. All samples were mounted with Fluorescent Mounting Medium (Dako, Glostrup, Denmark). Fluorescence-stained cells were examined on confocal microscope (FV1000D, Olympus, Tokyo, Japan). Fluorescence was detected with wavelengths for excitation at 488 nm (Alexa Fluor 488) and 360 nm (DAPI).
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5

Quantifying Proliferation in FFPE Tumors

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Formalin-fixed paraffin-embedded (FFPE) tumor sections (5 µm) from A549 tumors were used for hematoxylin and eosin (H&E) staining and proliferation analysis with anti-Ki67 antibody (Leica Biosystems; Cat#: NCL-Ki-67p). Briefly, sections were deparaffinized, incubated overnight at 4 °C with primary antibodies, washed, and incubated with secondary antibodies HRP Labelled Polymer Anti-Rabbit (Dako EnVision+ System; Cat#: K4002) following the manufacturer's protocol. Slides were counterstained with hematoxylin counterstain and coverslips were mounted using non-aqueous mounting media. Images were scanned at 20 x magnification using the Aperio Scanscope system.
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6

Immunohistochemical Staining of FFPE Rat Prostate

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Slides containing sections of formalin fixed, paraffin embedded (FFPE) rat prostate tissue were steamed for 25 min (E. coli IHC) or 40 min (Ki-67, CD68) in high temperature target retrieval (HTTR) solution for antigen retrieval (Dako). Slides were then incubated with an anti-E. coli antibody (Virostat, Inc., product #1001) at a dilution of 1:2000, anti-CD68 antibody (Abcam ab125212) at 1:1000, or anti-Ki-67 antibody (Novocastra) at 1:1000 for 45 min at room temperature, followed by incubation with secondary antibody (PowerVision, Leica Microsystems) for 30 min at room temperature. Staining was visualized using 3,3’-Diamino-benzidine (Sigma FAST 3,3’-Diamino-benzidine tablets), and slides were counterstained with hematoxylin.
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7

Immunohistochemical Analysis of Tumor Apoptosis

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Peritoneal implanted tumours were harvested and paraffin-embedded for immunohistochemical analysis using anti-SOCS1 antibody (Abcam, Cambridge, MA, USA) and anti-Ki-67 antibody (Novocastra Laboratories, Newcastle, UK). A TUNEL assay (with DAPI nuclear counterstaining) for apoptosis was carried out using the ApopTag Fluorescein In Situ Apoptosis Detection Kit (Chemicon International, Temecula, CA, USA) according to the manufacturer's instructions.
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8

Cardiac Tissue Analysis Post-Cell Transplant

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Rats were euthanized 2 or 4 weeks after cell transplantation. Hearts were harvested and fixed in 4% paraformaldehyde and incubated overnight in 15% sucrose solution. The tissues were embedded in OCT compound (Sakura Finetek), snap-frozen in liquid nitrogen, and sectioned at 10 – 20 µm thickness as described previously by our laboratory [28 (link)]. For capillary density measurement, four frozen sections of ischemic tissues were stained with primary biotinylated isolectin B4 (ILB4) (1:250, Vector Laboratories, Inc., Burlingame, CA) and secondary streptavidin Alexafluor 488 (1:400, Invitrogen). Five fields from four tissue sections were randomly selected, and the number of capillaries was counted in each field. Photographs were taken using fluorescent inverted microscopy or confocal microscopy. To evaluate apoptosis, TdT-mediated dUTP nick-end labeling (TUNEL) reaction was performed using a fluorescein in situ cell death detection kit (Roche-Molecular). To investigate proliferative cells, immunostaining with anti-Ki-67 antibody (Novocastra Laboratories) was performed. Details of the above procedures were described in our prior publications [28 (link), 31 (link)].
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