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6 protocols using ab278053

1

Western Blot Analysis of Protein Markers

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Tissues and cells were harvested and lysed in RIPA buffer supplemented with Protease Inhibitor Cocktail (Sigma-Aldrich, St Louis, USA). After the proteins were extracted, the concentrations were measured using a BCA kit (Beyotime Biotechnology, Shanghai, China), and proteins were separated by 8%‒12% SDS-PAGE and blotted onto PVDF membranes (Millipore, Billerica, USA). After being blocked with non-fat milk for 1 h, membranes were incubated with specific primary antibodies targeting ELF4 (sc-515363; Santa Cruz, Santa Cruz, USA), FUT9 (60230-1-lg; Proteintech, Chicago, USA), CD44 (ab264539; Abcam, Cambridge, UK), and CD133 (ab278053; Abcam) overnight at 4°C. After wash with TBST 3 times, the membranes were incubated with the corresponding secondary antibodies for 2 h at room temperature. Finally, the ECL luminescent solution was evenly spread onto the PVDF membrane, and the signals were detected. Antibodies against β-actin (ab8227; Abcam), GAPDH (Cat#2118; Cell Signaling Technology, Beverly, USA), and tubulin (Cat#2146; Cell Signaling Technology) were used as the loading controls for western blot analysis.
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2

Antibody Validation for Stem Cell Markers

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The following antibodies were used for western blotting: rabbit monoclonal anti-CD24 (1:500, catalog number ab179821, Abcam, MA, USA), rabbit monoclonal anti-CD44 (1:500, catalog number ab189524, Abcam), rabbit recombinant multiclonal anti-CD133 (1:800, catalog number ab278053, Abcam), mouse monoclonal anti-Nanog (1:1000, catalog number ab173368, Abcam), rabbit monoclonal anti-OCT4 (1:500, catalog number ab200834, Abcam), mouse monoclonal anti-SOX2 (1:1000, catalog number ab79351, Abcam), rabbit polyclonal anti-DLG5 (1:1000, catalog number ab231283, Abcam), rabbit polyclonal anti-PRDM16 (1:1000, catalog number ab106410, Abcam), mouse monoclonal anti-ErbB-2 (1:500, catalog number sc-33684, Santa Cruz Biotechnology, CA, USA), and mouse monoclonal anti-β-actin (1:1000, catalog number A5441, Sigma-Aldrich, MO, USA). Other primary antibodies and secondary antibodies and experimental procedures for immunoblotting are provided in the supplementary experimental procedures10 (link).
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3

Protein Expression in Cervical Cancer Cells

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The proteins of differently treated cervical cancer cells were extracted with RIPA Lysis Buffer (PP110; Protein Biotechnology Co., Ltd, China) according to the manufacturer's instruction. Then, the concentration of the proteins was determined using a BCA protein assay kit (PP202; Protein Biotechnology Co., Ltd, China). Subsequently, 30 µg proteins in each group were separated by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The gels were then transferred onto a polyvinylidene fluoride (PVDF) membrane. The membrane was incubated in Tris-buffered saline containing 0.1% Tween-20 and 5% nonfat milk for 1 h. Then, the PVDF membrane was incubated overnight with primary antibodies against NANOG (ab203919; Abcam, USA), OCT4 (ab200834; Abcam, USA), CD133 (ab278053; Abcam, USA), SOX2 (ab92494; Abcam, USA), and β-actin (ab8227; Abcam, USA). Then, the membrane was incubated with HRP-conjugated secondary antibody (ab205718; Abcam, USA) for 2 h at room temperature. The bands of individual proteins were visualized using a chemiluminescence (ECL) kit (PP404; Protein Biotechnology Co., Ltd., China).
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4

Establishing CP Organoid Culture Model

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Due to the higher expression of B7-H3 in PCP than ACP, the experiments were investigated based on the samples from PCP. The CP organoids were cultured as described previously [21 (link)]. At first, the cells isolated from primary CP tissues were suspended with Corning Matrigel (Corning, Cat# 356255, NY, USA) mixed with organoid medium. Then, 3D organoids were prepared by seeding CP tumor cells in ultralow attachment dishes (Corning) and grown in DMEM/F12 medium (Gibco) supplemented with 1% hormone mixture B27 (Thermo Fisher Scientific, Cat# 17504044, Shanghai, China), 10 ng /mL human recombinant epidermal growth factor EGF (Sino Biological, Cat# 10605-HNAE, Beijing, China), and 10 ng /mL human recombinant fibroblast growth factor FGF (Sino Biological, Cat# 10573-HNAE, Beijing, China) for one month. Subsequently, the tumor organoids were transferred into a 24-well plate for co-culture assay. Primary antibodies against B7-H3 (#14058S; Cell Signaling Technology, Boston, Massachusetts, USA), CD133 (ab278053, abcam, Cambridge, UK), CK-7 (ab181598, abcam), and CTNNB1 (ab237984, abcam) were used in IHC staining.
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5

Immunohistochemical Profiling of Esophageal Cancer

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ESCC and adjacent healthy esophageal mucosa tissues of 79 patients were obtained. Written informed consent was obtained from all enrolled patients. The operation of this study was approved by the Ethics Committee of Shanghai East Hospital, Tongji University (2019-072). The tissue samples were fixed, embedded, and sectioned (4 μm thickness)
[12] (link). An antigen retrieval solution and a blocking solution were added to the sections after dewaxing. Primary antibodies including anti-ELF4 (sc-515363; Santa Cruz), anti-FUT9 (60230-1-lg; Proteintech), anti-CD44 (ab264539; Abcam), and anti-CD133 (ab278053; Abcam) were applied to the slides and incubated overnight at 4°C. After counterstaining with light hematoxylin, the slides were dehydrated, sealed with cover glass, and examined under a light microscope. The results were scored by two pathologists who were blinded to patient information.
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6

Immunofluorescence Staining of CD133 in Cells

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Cells were seeded on a 12-well culture plate (Thermo Fisher Scientific) at a density of 60% confluence. CD133 antibody (catalog: ab278053, Abcam) and mounting medium with DAPI (catalog: ab104139, Abcam) were applied to immunofluorescence staining according to the manufacturer’s protocol. Images were then collected with Olympus BX63 (Olympus, Shinjuku City, Tokyo, Japan).
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