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Srebp2

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SREBP2 is a protein that plays a key role in the regulation of cholesterol and lipid metabolism. It functions as a transcription factor, activating the expression of genes involved in the biosynthesis and uptake of cholesterol and other lipids. SREBP2 acts as a sensor for cellular cholesterol levels and helps maintain cholesterol homeostasis within the cell.

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8 protocols using srebp2

1

Western Blot Analysis of Cellular Proteins

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Cell lysates were prepared by washing cells twice with cold PBS and lysing cells in RIPA buffer (50 mM Tris-HCl pH 8.0, 150 mM NaCl, 0.5% sodium deoxycholate, 1% NP-40, 0.1% SDS, 1 mM EDTA, protease inhibitors) on ice for 30 min. Lysates were cleared by centrifugation and protein concentrations were determined using the Pierce 660 nm Protein Assay Kit (Thermo Fisher Scientific). Equal amounts of protein were diluted in Laemmli sample buffer, boiled for 5 min and resolved by SDS-polyacrylamide gel electrophoresis. The resolved proteins were then transferred onto nitrocellulose membranes. Membranes were then blocked for 1 h in 5% milk in tris-buffered saline/0.1 % Tween-20 (TBS-T) at room temperature, then probed with the following primary antibodies in 5% milk/TBS-T overnight at 4 °C: SREBP-2 (1:250, BD Biosciences, 557037), p44/42 MAPK (ERK1/2) (1:1000, Cell Signaling Technology, 4695), PARP (1:1000, Cell Signaling Technology, 9542 L), ɑ-Tubulin (1:3000, Calbiochem, CP06) and E-cadherin (1:1000, Cell Signaling Technology, 3195). Primary antibodies were detected using IRDye-conjugated secondary antibodies (1:20,000, LI-COR Biosciences, 926-32211 and 926-32210) and the Odyssey Classic Imaging System (LI-COR Biosciences). Densitometric analysis was performed using ImageJ v1.47 software.
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2

Molecular Analysis of Liver and Cell Signaling

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Livers from mice and Huh-7 cells were lysed in RIPA buffer (30 mmol/L Tris, pH 7.5, 150 mmol/L sodium chloride, 1  mmol/L phenylmethylsulfonyl fluoride, 1 mmol/L sodium orthovanadate, 1% Nonidet P-40, 10% glycerol, and phosphatase and protease inhibitors). Western blotting was performed on 30–50-μg protein samples using commercially available antibodies against the following antigens: EGFR, phospho-EGFR (pEGFR), Akt, phospho-Akt (pAkt), fatty acid synthase (FASN), anti-sterol responsive elementary binding protein 1 (SREBP1), and SREBP2 (all from BD Biosciences, San Jose, CA, USA). Secondary antibodies (goat anti-mouse and goat anti-rabbit) were obtained from Cell Signaling Technology, Inc. (Beverly, MA, USA).
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3

Western Blot Analysis of Cell Lysates

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Whole cell lysates were prepared by washing cells twice with cold PBS and lysing cells in RIPA buffer (50 mM Tris–HCl pH 8.0, 150 mM NaCl, 0.5% sodium deoxycholate, 1% NP-40, 0.1% SDS, 1 mM EDTA, protease inhibitors) on ice for 30 min. Lysates were cleared by centrifugation and protein concentrations were determined using the Pierce 660 nm Protein Assay Kit (Thermo Fisher Scientific). Equal amounts of protein were diluted in Laemmli sample buffer, boiled for 5 min and resolved by SDS-polyacrylamide gel electrophoresis. The resolved proteins were then transferred onto nitrocellulose membranes. Membranes were blocked for 1 h in 5% milk in PBS/0.1% Tween-20 (PBS-T) at room temperature, and then probed with the following primary antibodies in 5% milk/PBS-T overnight at 4 °C: SREBP2 (1:250; BD Biosciences, 557037), SREBP1 (1:250; Santa Cruz, sc-13551), α-Tubulin (1:3000; Calbiochem, CP06), Actin (1:3000; Sigma, A2066), PARP (1:1000; Cell Signaling Technology, #9542). Primary antibodies were detected using IRDye-conjugated secondary antibodies and the Odyssey Classic Imaging System (LI-COR Biosciences). Densitometric analysis was performed using ImageJ 1.47v software.
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4

Antibody-based Immunoblot Analysis

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Antibodies used for immunoblots were purchased from the indicated companies: p‐YAP (Ser127) (NO.13008), YAP (NO.14074), Lats1 (NO.3477), pLats1 (Ser909) (NO.9157), and pLats1 (Thr1079) (NO.8654) were from (Cell Signalling Technology). SREBP‐1 (Cat#557036), SREBP‐2 (Cat#557037) were from BD Biosciences.
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5

Immunoblotting and Immunoprecipitation Assays

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Immunoblotting and immunoprecipitation assays were performed as previously described78 (link), with antibodies recognizing CREB, Ser133-P-CREB, AMPK, P-AMPK, AKT, P-AKT (Cell Signaling), PGC-1α (Merck), CRTC2 (Calbiochem), PCK1 (Santa Cruz), SREBP1 (Santa Cruz), SREBP2 (BD), HA (Convance), LXRα (Santa Cruz), FLAG (Sigma), GST (Covance), HIS (Abmart), GAPDH (AOGMA), α-TUBULIN (Abmart), β-ACTIN (Abmart), and other antibodies (Supplementary Table 3). For immunostaining assays, primary cultured hepatocytes seeded on coverslips were fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.3% Triton X-100 in PBS, and then blocked by 5% normal goat serum and 0.3% Triton X-100 in PBS, followed by incubation with anti-CREB (1:1000), anti-P-CREB (1:1000), or anti-HA (1:3000) antibodies for 1 h at 4 °C. Slides were then washed, and after washing, slides were incubated with fluorochrome-conjugated secondary antibodies (Invitrogen). Slides were then washed and mounted with Vectashield mounting media containing 4, 6-diamidino-2-phenylindole (DAPI).
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6

Immunoblotting Protocols for Cellular Proteins

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For proteins other than HMGCR, immunoblotting was performed as previously described [4], using the following primary antibodies: SREBP2 (1 : 250; BD Biosciences, 557037), Actin (1 : 3000; Sigma, A2066), PKA C‐α (1 : 1000; Cell Signaling Technology, #4782), α‐Tubulin (1 : 3000; Calbiochem, CP06), and Ku80 (1 : 3000; Cell Signaling Technology, #2180). For HMGCR immunoblots, cells were seeded at 750 000 cells/well in 6‐well plates and treated as indicated for 24 h. Whole cell lysates were prepared by washing cells twice with cold PBS and lysing cells in ~ 80 μL of buffer (20 mm Tris pH 7.5, 150 mm NaCl, 1 mm EDTA, 1 mm EGTA, 0.5% Triton X‐100, protease inhibitors) on ice for 30 min. Lysates were cleared by centrifugation and protein concentrations determined using the Pierce 660 nm Protein Assay Kit (Thermo Fisher Scientific). Dithiothreitol (DTT) was added to a final concentration of 1 m. 4x Laemmli sample buffer was then added to the DTT‐containing lysates at room temperature. Samples were not boiled to limit aggregation of membrane proteins. Blots were probed with primary antibodies against HMGCR (A9) (1 : 1000; prepared in‐house) and Actin.
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7

Comprehensive Lipid Metabolism Signaling Pathway

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Antibodies to ACC1-pS79, ACC1, FASN, SCD1, Tubulin, TBP, GAPDH, AKT-pS473, AKT, GSK3β-pS21/9, GSK3β, TSC2-pT1462, TSC2, mTOR-pS2448, mTOR, S6K-pT389, S6K, S6-pS240/244, S6, 4E-BP1-pS65, 4E-BP1, β-actin, LRP6-pS1490, LRP6, TCF7L2, β-catenin, β-catenin-pS33/37/T41, IGF1R, AKT-pT308, and Lamin B were purchased from Cell Signaling. Antibodies to apoB, SCAP, Insig1, Insig2, Sp5, Sp1 were purchased from Santa Cruz Biotech (Santa Cruz, Ca, USA). Antibodies to MTP, SREBP1, SREBP2, IRS1 were purchased from BD Biosciences. Antibodies to ACAT2 and IGF1 were purchased from Novus. Antibodies to ELOVL6 (Thermo Scientific), DGAT1 (Bio Vision), GPAT1 (GeneTex), LXRα (Abcam), HMGCR (Upstate), and IRS1-pY612 (Invitrogen) were used for western blotting.
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8

Western Blot Analysis of Intracellular Signaling

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Cell lysates were prepared by washing cells twice with cold PBS and lysing cells in RIPA buffer (50 mM
Tris-HCl pH 8.0, 150 mM NaCl, 0.5% sodium deoxycholate, 1% NP-40, 0.1% SDS, 1 mM EDTA, protease inhibitors) on ice for 30 min. Lysates were cleared by centrifugation and protein concentrations were determined using the Pierce 660 nm Protein Assay Kit (Thermo Fisher Scientific). Equal amounts of protein were diluted in Laemmli sample buffer, boiled for 5 min and resolved by SDS-polyacrylamide gel electrophoresis. The resolved proteins were then transferred onto nitrocellulose membranes. Membranes were then blocked for 1 hr in 5% milk in tris-buffered saline/0.1 % Tween-20 (TBS-T) at room temperature, then probed with the following primary antibodies in 5% milk/TBS-T overnight at 4 ℃: SREBP-2 (1:250, BD Biosciences, 557037), p44/42 MAPK (ERK1/2) (1:1000, Cell Signaling Technology, 4695), PARP (1:1000, Cell Signaling Technology, 9542L), a-Tubulin (1:3000, Calbiochem, CP06) and E-cadherin (1:1000, Cell Signaling Technology, 3195). Primary antibodies were detected using IRDye-con ugated secondary antibodies and the Odyssey Classic Imaging System (LI-COR Biosciences).
Densitometric analysis was performed using ImageJ 1.47v software.
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