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10 protocols using citric acid

1

HPLC Analysis of Organic Acids in Vinegar

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Six organic acids (tartaric acid, malic acid, lactic acid, acetic acid, citric acid, and succinic acid) were analyzed with an HPLC (1260 series, Agilent, Santa Clara, CA, USA) equipped with a YMC-Triart C18 (4.6 × 250 mm, 5 μm) column. The mobile phase was 25 mM KH2PO4 (pH 2.5) and the temperature was set to 30 °C. A 210 nm diode array detector (DAD) and a 1.0 mL/min flow rate were used. The injection volume was 20 μL. Vinegar samples were diluted 10-fold with 0.4% HCl and then filtered with 0.22 μm polyvinylidene fluoride (PVDF) membrane. Standards for six organic acids were also dissolved in 0.4% HCl and used. Concentrations of standards were set to 5, 10, 25, 50, 75, 100, 150, and 200 μg/mL. Correlation values were all over 0.9999. Standards used included L (+)-tartaric acid, 99+% (purity 100%, Thermo Fisher Scientific, Waltham, MA, USA), DL-malic acid (purity 99.2%, TCI, Tokyo, Japan), DL-lactic acid (purity 90.6%, TCI, Tokyo, Japan), acetic acid (purity 99.9%, TCI, Tokyo, Japan), citric acid (purity 99.7%, TCI, Tokyo, Japan), and succinic acid (purity 98.9%, TCI, Tokyo, Japan). The organic acid analysis was performed based on the method in the previous report, with some modifications [26 (link),27 (link)].
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2

Citric Acid Recovery from Fermentation Broth

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The fermenting broth was filtered using Whatman filter paper No. 1 to remove the fungal biomass. The citric acid in the filtrate was recovered by the double precipitation method [44 , 50 (link)] using Ca(OH)2 and H2SO4 in a stepwise manner to separate citric acid from the fermenting broth. To 500 ml of the filtrate, 30 g of Ca(OH)2 was added and agitated briefly at 60 °C. The calcium citrate precipitate that was formed was recovered, diluted with distilled water (1:10) and further treated with conc. H2SO4 (10:1). The sequence of the recovery process of citric acid is depicted in Fig. 3. The quantification of the citric acid was done on HPLC Infinity 1260 (Agilent Technologies, USA) [5 (link), 38 (link)] at a wavelength of 211 nm using a diode array detector (DAD). The citric acid (Sigma-Aldrich, Darmstadt, Germany) was prepared by dissolving 0.001 g in 10 ml of sodium phosphate buffer and used as standard. Acetonitrile buffer at 70:30 (pH 6.5) was used as the mobile phase at a flow rate of 1.0 ml/min. The temperature of the column (Primesep D, 100 Å, 5 μm, 4.6 × 150 mm) was maintained at 35 °C during the analysis.

Scheme for the recovery and purification of citric acid

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3

Immunohistochemical Analysis of Lung Tissue

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Four-μm-thick formalin-fixed, paraffin-embedded serial sections of lung tissues were used for immunohistochemistry analysis of E-cadherin and vimentin expression. The sections were immersed in xylene for 15 minutes before being rehydrated in water by using an ethanol gradient. Then the sections were immersed in citric acid (pH 6.0; DAKO) for 10 minutes, after the samples were cooled to room temperature, the sections were washed with water and PBS buffer for 15 minutes before incubated with 3% H2O2 for 10 minutes. Then the sections were blocked with 5% BSA for 30 minutes before incubated with the primary antibody overnight at 4 °C. Color development was performed by using a DAB color development kit (DAKO). Sections were scanned by Pannoramic Scanning Electron Microscope to view the images.
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4

Histological Analysis of Mouse Tissues

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Mouse tissue samples were fixed in 10% buffered formalin overnight, washed with phosphate-buffered saline (PBS), transferred to 70% ethanol, embedded in paraffin, sectioned (5 μm thick), and stained with hematoxylin and eosin (H&E). Histopathological examination was performed on all tissue sections by a pathologist (M. James You). Specific tissue areas were quantitated by counting pixels with digital imaging software (Photoshop). For immunohistochemical staining, paraffin-embedded sections were deparaffinized in xylene and rehydrated in ethanol. Antigen was retrieved using citric acid (pH 6.0, Dako). Endogenous peroxidase activity was blocked using 3% hydrogen peroxide in PBS. Sections were blocked with 5% bovine serum albumin in PBS and incubated with the primary antibody. The sections were then washed with PBS and incubated with a horseradish peroxidase-conjugated secondary antibody, followed by incubation with diaminobenzidine (DAB, Sigma).
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5

Immunohistochemical Analysis of Tumor Tissues

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Tumor tissues were fixed with 4% paraformaldehyde (PFA, V/V), followed by paraffin embedding. 4-μm tissue sections in paraffin were soaked in xylene for 15 min before dehydration with gradient ethanol. Each section was then soaked with citric acid (pH 6.0 DAKO) for 10 min at 95° for antigen retrieval and cooled to ambient temperature. After washing with TBST buffer for a 15-min period, the sections were incubated with 3% H2O2 for 10 min. Tissue sections were blocked using 5% bovine serum albumin (BSA) for 30 min, followed by overnight incubation using primary antibodies E2F2 (Ab138515, Abcam) and Ki67 (ab15580, Abcam) under 4°C. Color development was performed using a DAB color-rendering kit (Soleibol, Japan). The images were captured using a Leica AM6000 microscope.
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6

Immunohistochemistry for Tumor Antigen Detection

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Immunohistochemistry (IHC) is a technique for determining the tissue distribution of an antigen of interest in health and disease using monoclonal and polyclonal antibodies. Specific tumor antigens are expressed de novo or upregulated in particular tumors, and IHC is commonly utilized for cancer diagnosis. In this study, the slices were soaked in xylene for 15 min before being rehydrated with gradient ethanol. Thereafter, citric acid (pH 6.0 DAKO) was utilized to incubate sections for a 10-min period. When cooling to ambient temperature, we rinsed sections with water and PBS for a 15-min period and later incubated those using 3% H2O2 for a 10-min period. After blocking for a 30-min period using 5% bovine serum albumin (BSA), a primary antibody was utilized to incubate sections overnight under 4°C, followed by developing a DAB color-rendering kit (Soleibol). A panoramic scanning electron microscope was used to scan the sections and observe the images.
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7

Golgi Fragmentation Quantification

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Followed the protocol as described in (Tan et al., 2017 (link); Robertson and Isacke, 2011 (link)). Briefly, paraffin-embedded tissues were de-paraffinized and dehydrated. Citric acid (s1399, Dako, USA) was used for antigen retrieval. Sections were blocked and then incubated with fluorophore-conjugated GM130 antibody for 1 h at RT. Tissues were counterstained with DAPI and imaged by confocal microscopy using Zstacks. Golgi fragmentation was quantified by normalized fluorescence intensity. Antibody details in Key Resources Table.
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8

Immunohistochemistry of Formalin-fixed Tissues

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Formalin-fixed, paraffin-embedded tissues were cut into 4μm sections. The sections were de-thawed in Xylene and rehydrated in sequentially diluted ethanol baths. Citric acid (s1399, Dako, USA) was used for antigen retrieval and 3% H2O2 was used to block endogenous peroxidase activity. Sections were then incubated O/N at 4°C with primary antibody and 1 h at RT with secondary antibody. Immunohistochemistry was carried out using Streptavidin (Life technologies #SNN1004), Envision + System (Dako), and HRPDAB (Dako) colorimetric detection. Antibody details in Key Resources Table.
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9

Immunohistochemistry of Formalin-fixed Tissues

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Formalin-fixed, paraffin-embedded tissues were cut into 4μm sections. The sections were de-thawed in Xylene and rehydrated in sequentially diluted ethanol baths. Citric acid (s1399, Dako, USA) was used for antigen retrieval and 3% H2O2 was used to block endogenous peroxidase activity. Sections were then incubated O/N at 4°C with primary antibody and 1 h at RT with secondary antibody. Immunohistochemistry was carried out using Streptavidin (Life technologies #SNN1004), Envision + System (Dako), and HRPDAB (Dako) colorimetric detection. Antibody details in Key Resources Table.
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10

Golgi Fragmentation Quantification

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Followed the protocol as described in (Tan et al., 2017 (link); Robertson and Isacke, 2011 (link)). Briefly, paraffin-embedded tissues were de-paraffinized and dehydrated. Citric acid (s1399, Dako, USA) was used for antigen retrieval. Sections were blocked and then incubated with fluorophore-conjugated GM130 antibody for 1 h at RT. Tissues were counterstained with DAPI and imaged by confocal microscopy using Zstacks. Golgi fragmentation was quantified by normalized fluorescence intensity. Antibody details in Key Resources Table.
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