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6 protocols using ripa protein lysis buffer

1

Western Blot Protein Analysis Protocol

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Total protein was extracted by RIPA protein lysis buffer (R0020, Solarbio Science & Technology Co. Ltd., Beijing, China) and quantified by the BCA methods. Protein bands were separated by SDS‐PAGE and then transferred to a polyvinylidene difluoride (PVDF) membrane. After blocking with 5% bovine serum albumin (BSA) for 1 h, the PVDF membrane was incubated with primary antibodies at 4°C overnight. After being washed three times in TBST, the membrane was incubated with secondary antibodies for 2 h at room temperature. Finally, the bands were visualized with enhanced chemiluminescence (ECL) Kit using an Image Quant LAS 4000 mini (GE). The intensity of western bands was quantified by ImageJ 5.1 software.
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2

Western Blot Analysis of Protein Expression

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Total protein was isolated from the ACs with different treatments using RIPA protein lysis buffer (Solarbio, China), and protein concentrations were determined by a BCA assay kit (Beyotime, China). Briefly, the protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) under denaturing conditions and then transferred to PVDF membranes (Millipore, United States). After blocking with 5% skimmed milk at room temperature for 2 h, the membranes were incubated with anti-matrix metallopeptidase 13 (MMP13) antibody (abcam, United Kingdom), anti-MMP3 antibody (abcam, United Kingdom), anti-SRY-box9 (SOX9) antibody (abcam, United Kingdom) and anti-GAPDH antibody (abcam, United Kingdom) overnight at 4°C. After being washed with Tris-buffered saline and tween 20 (TBST, Yeasen, Shanghai, China) for 3 times, the membranes were then incubated with the secondary antibody (goat anti-rabbit IgG-HRP, abcam, United Kingdom) for 2 h under room temperature. The protein bands were exposed using ChemiDoc MP (Bio-Rad, United States). The gray value of protein bands was determined using ImageJ (National Institutes of Health, United States).
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3

Western Blot Protein Analysis Protocol

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Radio immunoprecipitation assay (RIPA) protein lysis buffer (Solarbio) supplemented with protease inhibitor cocktail (Roche, Basel, Switzerland) and phenylmethylsulfonyl fluoride (Roche) was applied for protein extraction. The proteins concentration was evaluated through a BCA Protein Assay Kit (Solarbio). Ten percent sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) was used to detach protein extracts (50 μg). The protein extracts were transferred to 0.22 mm polyvinylidene fluoride membranes (Sigma), then incubated with specific antibodies. ECL chromogenic substrate was applied to evaluate the specific bands. The specific bands were then quantified by densitometry (Quantity One software, Bio-Rad) with β-actin used as a control. All antibodies (1:2,000 dilutions) were purchased from Abcam (Cambridge, United Kingdom).
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4

Quantitative Western Blot Analysis of GBM Cell Proteins

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The protein was extracted GBM cells by RIPA protein lysis buffer (Solarbio, R0010), with a freshly added mixture of protease inhibitor cocktail and PMSF. Then, 20 µg of protein was run on an SDS-PAGE gel, separated by electrophoresis and transferred to PVDF membranes. The membrane was first blocked by 5% BSA for 1-2 hours at room temperature, followed by incubation with primary antibodies at 4°C overnight. After washing three times with PBST, the membrane was blocked with secondary antibodies (Promega, 1:10000). Protein bands were detected was performed using G:BOXF3 (Syngene, UK) with Western HRP Substrate (Millipore, WBLUF0500). The antibodies used for western blots were: PD-L1 (Abcam, ab58810, 1:500), NF-κB (Cell Signaling Technology, 8242, 1:1000), Phospho-NF-κB (Cell Signaling Technology, 3033, 1:1000), UBXN1 (Proteintech, 16135-1-AP, 1:1000), GAPDH (Proteintech, 60004-1-Ig, 1:1000).
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5

Protein Extraction and Western Blot Analysis

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RIPA protein lysis buffer (Solarbio, Cat#R0020, Beijing, China) and protease inhibitor PMSF were used to extract total cell protein. The volume ratio of RIPA and PMSF is 100 μl:1 μl. We used the Bradford to measure the protein concentration at 595 nm. As for gel prepare, we used the SDS-PAGE Gel Kit (Solarbio, P1200-50T, China) to prepare 10% gel according to its manuscription. The prepared protein sample is added to the gel channel for constant voltage electrophoresis. After the electrophoresis, the protein in the SDS-PAGE gel is transferred to the PVDF membrane. Subsequently, the PVDF membrane was placed in 5% fat-free milk and blocked for 1 h at room temperature. Then the appropriate diluted primary antibody was used to incubate the PVDF membrane at 4 °C overnight. On the second day, wash the PVDF membrane three times with TBST for 10 min each time. After washing, the blots were incubated with HRP conjugated anti rabbit or antimice IgG for 1 h. The blots were developed in ECL mixture (Vector Laboratories, Burlingame, CA) and visualized by Imager. The corresponding antibody and dilution ratio are shown in the list A.
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6

Protein Extraction and Western Blot Analysis

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A RIPA protein lysis buffer (Solarbio) containing a protease inhibitor cocktail was used to isolate protein extracts from DPCs. Next, a BCA protein assay kit (ThermoFisher) was used to measure the absorbance at 562 nm to obtain protein concentrations. Total protein (20 µg) was subjected to SDS-PAGE, and the resolved proteins were transferred to a polyvinylidene fluoride membrane (Millipore, Saint Louis, USA). The membrane was blocked in 5% bovine serum albumin (Solarbio) for 1 h and probed with primary antibodies overnight at 4 °C. The associated primary antibodies were those against alkaline phosphatase (ALP, ab224335, Abcam, Eugene, USA), versican (bs-2533R-A350, Bioss, Beijing, China), neural cell adhesion molecule (NCAM, bsm-52824R, Bioss), and β-catenin (ab32572, Abcam) and β-actin (ab8226, Abcam). After triple washing with Tris-buffered saline Tween (TBST, Solarbio), the membrane was incubated with the corresponding secondary antibody (ab150077, Abcam) for 1 h at 20–25 °C. An Odyssey infrared fluorescence scanning imager (Bio-Rad, Hercules, USA) was used for photography.
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