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4 protocols using anti ns1

1

Immunoprecipitation and Immunoblotting of Influenza Viral Proteins

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Cells were harvested in lysis buffer (50 mM Tris pH 8.0, 5 mM NaCl, 0.5% NP-40, and 1X protease inhibitor), frozen and thawed three times, and then the proteins were recovered. Immunoprecipitation (IP) proceeded overnight at 4 °C in IP buffer containing antibodies against Grail or Flag. The IP mixture was then incubated with Dynabeads Protein G (Invitrogen) for 1 h prior to isolation using a DynaMag magnet and washing three times with SNNTE buffer (5% sucrose, 1% NP-40, 0.5 M NaCl, 50 mM Tris pH 7.4, and 5 mM EDTA). The immunoprecipitates were resuspended in SDS-PAGE sample buffer, boiled, and loaded onto a gel. Following separation, the proteins were transferred to a nitrocellulose membrane and the blot was probed with antibodies diluted in PBS/Tween 20 with 5% non-fat milk. Antibody detection was carried out using enhanced chemiluminescence reagents (GE Healthcare), as described by the manufacturer. The primary antibodies used for immunoblotting were: anti-PA (GeneTex), anti-PB1 (GeneTex), anti-PB2 (GeneTex), anti-HA (GeneTex), anti-NA (GeneTex), anti-NP (GeneTex), anti-M1 (GeneTex), anti-M2 (GeneTex), anti-NS1 (GeneTex), anti-HA (81B8, Cell Signaling, USA), anti-beta actin (MAb1501, Chemicon), and anti-Grail antibodies.
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2

Western Blot Analysis of Viral Proteins

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Whole cell lysates were prepared and separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) followed by electro-transfer onto nitrocellulose (NC) paper (Bio-Rad). The filter was blocked in 5% skim milk for one hr, and then incubated with the primary antibodies at 4°C for overnight. Subsequently, the filter was rinsed with PBS containing 0.05% Tween 20 (PBS-T) for five times, followed by incubation with the corresponding secondary antibody conjugated with horseradish peroxidase (HRP) for 1 hr. After washing with PBS-T, protein signals were detected by enhanced chemiluminescence (ECL) and acquired by ImageQuant LAS 4000 (GE Healthcare, Uppsala, Sweden). The dilutions of each antibody were as follows: anti-β-actin (1:1,000; Signalway Antibody), anti-FLAG (1:2,500; Signalway Antibody), anti-β-actin (1:5,000; Jackson), anti-NS1 (1:2,000, GeneTex), anti-NP (1:1,000; GeneTex), anti-PKR (1:2,000, Abcam), anti-PKR-p (T446; 1:2,000; Abcam), anti-HA (1:2,500; Yao-Hong Biotechnology, Taiwan).
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3

Antibody panel for protein detection

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The antibodies used in this study included anti-HA (#3724, Cell Signaling), anti-V5 (#13202, Cell Signaling; T0057, Affinity Biosciences), anti-Flag M2 (F3165; Sigma), anti-OTUB1 (GTX57636, GeneTex), anti-lamin-B1 (GTX103292, GeneTex), anti-α-tubulin (Clone DM1A, T9026; Sigma), anti-ubiquitin (Ub) (A11227, Abclonal), anti-PB2 (GTX125926, GeneTex), anti-NP (GTX125989, GeneTex), anti-M1 (GTX125928, GeneTex), anti-NS1 (GTX125990, GeneTex), anti-NA (GTX125974, GeneTex), anti-NS2 (GTX125953, GeneTex), anti-GST (sc-459, Santa Cruz Biotechnology), and anti-His (05-949, Millipore) antibodies.
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4

Immunofluorescence Assay for MAVS and NS1

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Indicated cells were transfected with various NS1 or MAVS constructs for 24 h, followed by fixation with 3.75% formaldehyde at room temperature for 30 min and then permeabilization with 0.5% NP40 at room temperature for 10 min. Cells were incubated with anti-MAVS (1:200 dilution; Santa Cruz Biotechnology, Dallas, TX, USA), anti-NS1 (1:200 dilution, Genetex, Alton Pkwy Irvine, CA, USA), or anti-S tag antibody (1:200, Novagen, San Diego, CA, USA) for 1 h at room temperature and then incubated with secondary antibodies conjugated with Alexa Fluor 488 (1:5000 dilution, Invitrogen) or Alexa Fluor 594 (1:5000, Invitrogen) for one additional hour. Wash steps were performed between each step using PBS containing 1% FBS.
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