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448 protocols using sas software v9

1

Socioeconomic Determinants of Adiposity

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Summary statistics are described by the mean with SD, median with IQR or frequencies. Comparative analyses of health behaviour and adiposity by income quintile and LICO groups were performed using multivariable linear regression models. These models were adjusted for within-school clustering through an autoregressive covariance structure. Wald χ2 (5 levels, 4 degrees of freedom) was used to determine the global statistical difference among all household income quintiles. The lowest quintile was used as the reference against which all other categories were assessed. For LICO, the middle category (ie, areas with more than zero but less than the provincial average living below the after-tax LICO) was used as the reference category. All regression models were adjusted for age, sex, area (rural/urban) and number of siblings (as an estimate of family size). Effect of area (rural/urban) was obtained in the regression models for income quintile; this result would not have differed if the model for LICO group had been used. All analyses were performed using SAS software, V.9.3 (SAS Institute, Cary, North Carolina, USA).
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2

JMJD6 Expression and Survival Outcomes

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Overall Survival (OS) defined as time from diagnosis to death or date of last follow-up and Disease Free Survival (DFS) defined as time from diagnosis to relapse, death or date of last follow-up (for censored patients) were studied.
Survival distributions were estimated by Kaplan-Meier method and compared between expression level groups using the Log-Rank test. To evaluate a possible relationship between DFS and JMJD6 expression, univariate Cox proportional hazard regression models were built by considering JMJD6 expression and some covariates, approved to be prognostic of DFS (tumour size, lymph node involvement, ERα, PR, HER2 status and SBR grade). All variables significant at 10% in univariate analysis were included in the initial multivariate model, as well as interactions between them, significant at 5% level. A backward manual selection procedure was used to lead to the final model by removing non-significant variables (p>0.05).
All statistical analyses were performed using SAS software, v 9.3 (SAS institute Inc, Cary, NC, USA).
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3

Congenital CMV and Infant Mortality

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Chi-square or Fisher’s exact tests (when more than 25%
of expected cell frequencies were less than five) was used to compare
differences in proportions between cCMV and CMV-non-infected infants.
Univariate and multivariable logistic regression analysis was used to
examine the relationship of cCMV and HIV infection, demographic/geographic
parameters, maternal characteristics, and infant mortality. Covariates with a
p-value of less than 0.15 from univariate models were included in the initial
multivariable model selection. All computations were done using SAS software
v9.3 (Cary, NC, USA).
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4

Adjuvant Melanoma GVAX Toxicity Trial

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This study was designed to address its primary objectives to determine the toxicity and tolerability of Melanoma GVAX administered in the adjuvant setting, with or without low dose CPM. Thus, the trial was designed to include at least 19 patients in 3 sequentially enrolled cohorts (3 in Cohort A, 8 in Cohort B, and 8 in Cohort C). Changes in pharmacodynamic variables were evaluated using the Wilcoxon paired-sample signed rank test, and comparisons between cohorts were performed using the Mann–Whitney U test. Analyses of peripheral blood leukocyte subsets over time on treatment and among cohorts were performed using linear mixed effect models. Potential correlations between IFN-g serum concentrations and monocyte characteristics were subjected to a 2-sided Spearman correlation analysis. All statistical analyses were 2-sided, and p values <0.05 were considered significant (SAS software v.9.3, Cary, NC; R version 2.15.1; or GraphPad Prism v.5, San Diego, CA, USA). Secondary endpoints were considered exploratory and included changes in anti-melanoma immune responses. A positive immune response was defined as a two-fold increase in melanoma-specific reactivity compared to background assay values, comparing pre- to post-treatment levels.
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5

Prevalence and Factors Associated with NVAF and HUA

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Continuous variables were expressed as mean±SD and categorical variables as number (percentage). Comparisons between groups were made using the Student t-test or χ2 tests, as appropriate. Multivariable logistic regression models were developed to investigate the risk factors for HUA and the associations between the prevalence of NVAF and HUA. ORs and corresponding 95% CI were calculated to assess the associations. Receiver operating characteristic (ROC) analyses were used to calculate the predictive value of SUA and HUA for NVAF. SAS software V.9.3 (SAS Institute) was used for the statistical analyses. All statistical tests were two-sided, and a p<0.05 was statistically significant.
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6

Statistical Analysis of Experimental Findings

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Statistical analysis was performed with General Linear Model Procedure of the SAS
software v.9.3 (SAS Institute, USA) using the Tukey’s honest significance
test (HSD). Differences were considered significant at p< 0.05.
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7

Oral OA Therapy and Knee Replacement Risk

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Descriptive analyses of sociodemographic and clinical characteristics were conducted for case and control patients. These included matching variables (gender and, at index date, age, income level, WOMAC pain, and KL grade), the aforementioned covariates, and exposure to the different classes of oral OA therapies in the 3 years prior to KR. Proportions were calculated for categorical variables, and median and interquartile range (IQR) for continuous variables.
The association between the occurrence of KR and sociodemographic/clinical characteristics (not those used in the matching between cases and controls) was measured using crude conditional logistic regression. An adjusted regression model including significant covariates and pertinent clinical variables was employed to determine the association between exposure to oral OA therapies and occurrence of KR. Odds ratios (OR) and 95% confidence interval (CI) were calculated. Only data with sufficient patient number (n > 10) per time exposure were analyzed and presented. A two-tailed p value <0.05 was considered significant. All statistical analyses were performed using SAS software, V.9.3 (SAS Institute, Cary, NC, USA).
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8

Statistical Analysis of Experimental Data

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The obtained data were statistically processed using the SAS software, v. 9.3. (24 ). Statistical analysis included descriptive statistics (average, minimum and maximum value), analysis of variance (one-way ANOVA) and comparison of mean values (Duncan’s multiple-range test). Principal component analysis (PCA) was constructed using Python library Scikit-learn v. 0.20.3 (25 ) was used for both classifiers.
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9

Automated Syphilis Outbreak Detection Using HLCM

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The AZSTDP HLCM process consisted of 5 steps: (1) positive syphilis RPR data were imported in line-listed format into SAS Software v.9.3 (Cary, NC); (2) a frequency analysis was performed to count the positive RPR results per month for the current year and each month in the corresponding 3-month periods in the previous 3 years; (3) the mean for each historical and current data point was calculated; (4) a SAS Proc SGPLOT was performed to visualize the output; (5) the HLCM is run in SAS once monthly and interpreted by a state-based AZSTDP epidemiologist.
An outbreak alert occurs when the following condition is met for 2 consecutive months:
X0>μ+2σx
Where X0 is the number of reported positive RPR results in the current month, and μ and σx are the mean and standard deviation of the historical positive RPR data. This method uses monthly data from three 3-month periods (the current month, the preceding month, and the subsequent month) in the corresponding months from the preceding 3 years; for a total of 9 data periods (Fig. 1).
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10

Statistical Analysis of Endothelial Dysfunction in RA

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Data are reported as mean (SD) or median (interquartile range, IQR) unless otherwise indicated. Proportions were compared using chi-square test or Fisher's exact test. The accordance with a normal distribution was tested by Shapiro-Wilk and Kolmogorov-Smirnov tests. For intergroup comparisons between control subjects and RA patients, Student's t-test or Mann-Whitney test was used where appropriate. General Linear Models (GLM) procedure was used for age-sex adjusted comparisons between the controls and RA subjects. Homogeneity of variances was verified by Levene's test and in appropriate cases,Welch correction was applied.
GLM were used to test unadjusted and age-sex adjusted differences between the three groups: non-RA and RA subjects with low and high activity of disease-type III sum of square was used. The Bonferroni test was performed for post hoc comparisons. Spearman rank correlations were applied to test associations between systemic inflammatory markers (ESR, hsCRP, TNF-α, and IL-6) and biochemical measures of endothelial activation (vWf, MCP-1, ADMA, sVCAM-1, sE-selectin, OPG, and PTX3) in either non-RA and or RA subjects.
Two-tailed P values of less than 0.05 were considered statistically significant. Statistical analysis was performed by SAS software v. 9.3 (SAS Institute, Cary, NC, USA).
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