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3 protocols using caspase 11

1

Western Blot Analysis of Cellular Proteins

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Cells or tissues were lysed in RIPA Buffer (Solarbio, Beijing, China) containing proteinase inhibitor cocktail. Proteins were separated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene fluoride (PVDF) membranes. The membranes were blocked and incubated with primary antibodies including CitH3 (1:1000), MPO (1:1000), LC3B (1:1000), SQSTM1/p62 (1:1000), GPX4 (1:2000, ab125066, Abcam), cleaved caspase-3 (1:1000, 9661, Cell Signaling Technology), caspase-3 (1:1000, 9662, Cell Signaling Technology), caspase-11 (1:1000, 14340, Cell Signaling Technology), SIRT1 (1:1000), METTL3 (1:1000), β-Actin (1:3000, 3700, Cell Signaling Technology). Signals were detected with a ECL chemiluminescence kit (Tanon, Shanghai, China) after HRP-conjugated secondary antibodies incubation.
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2

Antibody-Based Protein Expression Analysis

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We used antibodies for p-JNK, total JNK, p-ERK, total-ERK, AceH3K9, H3K917Me3, Bcl-XL, Caspase3, cleaved Caspase 3, Caspase 11, ILβ and cytochrome C (Cell Signaling Technology); β-actin and BAX (Santa Cruz Biotechnology, Inc.). Secondary antibodies were IRDye680 conjugated anti-mouse IgG and IRDye680 conjugated anti-goat IgG, IRDye800 conjugated anti-rabbit IgG and IRDye800 conjugated anti-goat IgG (Rockland, PA) (LICOR); TRITC- and FITC-conjugated donkey anti–mouse, anti–goat, and anti–rabbit (Jackson ImmunoResearch Laboratories, Inc.), and DAPI (Life-Tech); Antibodies CD68 (e-Bioscience), JC-1 staining kit (Thermo Fisher Scientific), and TUNEL assay kit (TMR Tunel staining kit, Roche) JNK-inhibitor SP600125 (Calbiochem) and ERK–inhibitor PD98059 (Calbiochem).
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3

Antibody-Mediated Analysis of Cellular Signaling

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Antibodies specific for CD11b were from BD Biosciences; p-rpS6, rpS6, p-AktS473, p-AktT308, Akt, p-AMPK, AMPK, tubulin, mTOR, LC3A, p-cofilin, cofilin, caspase-11, and FLAG (Cell Signaling); caspase-1 (Genentech); HA (Abcam); CD40, CD80, and anti-rabbit IgG (Biolegend Pharmaceuticals); anti-goat and -rabbit (Alexa 647) IgG (Molecular Probes); Concanamycin A (Sigma-Aldrich); LimKi 3 and Jasplakinolide (EMD Calbiochem); Torin1(Tocris); rapamycin (Cell Signaling); IRDye680- and IRDy800-conjugated antibodies (anti-rabbit, anti-mouse) (LI-COR Biosciences); phalloidin and LysoSensor Yellow/Blue dextran (ThermoFisher); Streptavidin (PE) (Jackson ImmunoResearch); and FAM-FLICA caspase-1 assay kit (ImmunoChemistry Technologies). Antibodies specific to nucleosome (PL2-3), Smith (2.12.3), and CD16/32 (2.4G2) and L-cell media (LCM) for BMMφ differentiation were generated as previously described (13 (link)).
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