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57 protocols using dimension rxl

1

Quantification of Pancreatic Enzyme Levels

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For whole pancreas lipase measurements, frozen samples were removed from -80°C and thawed on ice. 100 μL TK lysis buffer with proteinase inhibitors (Calbiochem) was added to each pancreas and tissues were disrupted on ice with a homogenizer (Biospec Tissue Tearor). Lysates were spun at 3,000 rpm for 15 min at 4°C and supernatants were used for analysis. Lipase levels were measured using a lipase activity assay (Dimension RXL, Siemens).
For amylase measurements, cultured acinar cells were lysed in 100 μL RIPA buffer, spun at 3,000 rpm for 15 min at 4°C and the supernatants used for analysis. Amylase levels were measured in an autoanalyser (Siemens Dimension RXL) through a colorimetric reaction based on the ability of amylase to hydrolyse the chromogenic substrate 2-chloro-4-nitrophenol linked with maltotriose (CNPG3) into the coloured product 2-chloro-4-nitrophenol (CNP) plus CNPG2, maltotriose G3 and glucose. The absorbance increase at 405 nm is proportional to the amylase activity in the sample. Amylase levels (U/L) were normalized to the total protein content determined by a BCA assay (Pierce BCA Protein Assay Kit, Thermo Fisher Scientific, 23225).
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2

Aldosterone and Renin Biomarker Measurement

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Nonfasting blood samples were taken from the cubital vein of participants in the supine position. Aldosterone and renin concentrations were measured in EDTA plasma by radioimmunometric procedures (aldosterone: Coat-A-Count Aldosterone, Siemens Healthcare Diagnostics, Eschborn, Germany; renin: Renin III generation, Cisbio Bioassay, Bagnols-sur-Cèze Cedex, France) as previously described [11 (link)]. The aldosterone-to-renin ratio was calculated by dividing aldosterone by renin concentrations. Sodium and potassium concentrations were determined in serum on the Dimension RxL (Siemens Healthcare Diagnostics, Eschborn, Germany). Serum lipid concentrations were quantified by lipoprotein electrophoresis (HDL-C and LDL-C: HELENA SAS-3 system; Helena 7 BioSciences Europe, Tyne and Wear, UK) or were measured on the Dimension RxL (Siemens Healthcare Diagnostics, Eschborn, Germany). Triglycerides were measured enzymatically and total cholesterol was determined by the CHOD-PAP method. Non-HDL-C was calculated as difference between total and HDL-C.
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3

Serum Biomarker Measurement Protocol

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After collection, blood samples were centrifuged at 4000 rpm for 20 minutes and serum was stored at −70°C until analysis. Alanine aminotransferase (ALT) and aspartate aminotransferase (AST) levels were determined in systemic circulation using the Dimension RXL analyzer (Dade Behring, Dupond, Delaware).
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4

Toxicity Evaluation of EO Formulation

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For the evaluation of the potentially toxic and side effects of EO formulation, a clinical examination of tested animals was conducted at D0, D7, and D14, with special emphasis on general condition, animal behavior, feeding, and defecation. Additionally, blood samples from the jugular vein were taken from tested animals at D0 and D14 into a vacuum tube containing EDTA and used for the evaluation of toxic effects on blood count, whereby the analyses were conducted shortly thereafter (2–4 h after taking samples). Blood samples on the same days were also taken for biochemical analyses, for the evaluation of the effects of the applied EO formulation on the kidneys (parameters urea and creatinine) and the liver (activity of the enzymes aspartate aminotransferase (AST) and gamma-glutamyl transferase (GGT)).
A clinical chemistry system (Dimension RXL, Dade Behring, Ventura, CA, USA) was used to quantify urea, creatinine, and enzymes AST and GGT in serum samples. The white blood cell count, red blood cell count, hemoglobin, hematocrit, mean corpuscular volume, mean corpuscular hemoglobin, mean corpuscular hemoglobin concentration, platelets, lymphocytes, monocytes, neutrophil granulocytes, eosinophils granulocytes, and basophils granulocytes were determined in blood samples using an electronic particle counter (MS9; Melet Schloesing Laboratoires, Osny, France).
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5

Blood Lipid Sampling and Analysis

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After overnight fasting (12 hours) and supine rest for at least 10 minutes, blood samples were collected in vacutainers between 8 and 9 am (Vacutainer Systems, Belliver Industrial Estate) and centrifuged at 300g for 10 minutes to obtain supernatant, which was stored at −80°C until use.
Total cholesterol was measured according to routine methods using an enzymatic colorimetric method on a Dimension RXL apparatus (Dade Behring AG).
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6

Melatonin Metabolite Quantification in Urine

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The participants were instructed to discard the last void prior to bedtime and collect each subsequent void until the first next morning void. The samples were stored in a dark bottle at room temperature, the total volume measured, and then stored at -20C until assay. Urinary 6-sulfatoxymelatonin (aMT6s), a major melatonin metabolite, was measured by a competitive enzyme-linked immunosorbent assay (Bühlmann Laboratories AG, Schönenbuch, Switzerland). Urine creatinine was analyzed on an automated biochemical analyzer (Dimension RxL; Dade Behring, Newark, DE, USA). Urinary aMT6s/creatinine ratios were calculated by dividing urinary aMT6s levels by urine creatinine concentration, expressed as ng/mg, as previously described (McMullan et al., 2013b (link), McMullan et al., 2013a (link)). These values were referred to as nocturnal urinary aMT6s/Cr ratio. In addition, total urinary aMT6s was calculated from the concentration of aMT6s and urine volume.
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7

Glucose and Lactate Quantification

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GDS and GDR clones were cultured in 6-well plates under normal conditions and after 72 h supernatants were collected. Glucose and lactate concentrations were determined by colorimetric methods on an automated analyzer (Dimension RxL, Dade Behring, Milan, Italy). Values were normalized to cells number at the end of the incubation period.
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8

Lipid Profile Measurement Protocol

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Each subject underwent phlebotomy to obtain ca. 25 ml of venous whole blood from a cubital vein. Total cholesterol, triglycerides, LDL and HDL cholesterol concentrations were determined using a Dimension RxL unit (Dade-Behring, Germany). If triglyceride concentrations were < 4.6 mmol/liter and chylomicronemia was not reported, the LDL cholesterol concentration was calculated using the Friedewald formula [26 (link)]:
LDLcholesterol=Totalcholesteroltriglycerides/2.2HDLcholesterol
Lipid concentrations are given as mmol/liter (in order to convert HDL, LDL and total cholesterol concentrations to mg/dl, the molar value is multiplied by 38.67; for triglycerides, the multiplication factor is 87.5). Normal values were based on the reference range of the Department of Clinical Chemistry of the University of Ulm: total cholesterol < 5 mmol/l; LDL cholesterol < 3 mmol/l; HDL cholesterol > 1.2 mmol/l in women and > 1.0 mmol/l in men; triglycerides < 1.7 mmol/l.
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9

Fasting Plasma Biomarker Measurements

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Fasting plasma insulin was measured by fluorometric assay on a 1235 AutoDELFIA automatic immunoassay system (kit by Perkin Elmer Life Sciences; Wallac Oy, Turku, Finland). C-reactive protein (CRP), plasma cholesterol and triglycerides were measured using automated assays on the Dade Behring Dimension RxL analyser. CRP was measured using a particle enhanced turbidimetric (PETIA) technique and total cholesterol, high density lipoprotein (HDL) cholesterol and triglycerides were measured by enzymatic method. LDL Low density lipoproteins (LDL) cholesterol concentrations were derived by the Friedewald formula (LDL = total cholesterol - (triglyceride / 2.2) – HDL), when triglyceride levels were < 4.5 mmol/L. These analyses were conducted at the National Institute for Health Research (NIHR) Cambridge Biomedical Research Centre (BRC), Core Biochemical Assay Laboratory.
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10

Comprehensive Blood Biomarker Profiling

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CHr was measured on the ADVIA 2120 hematology analyzer (Siemens Diagnostic Solutions, Tarrytown, New York). Measurement was carried out by fluorescence flow cytometry as the CHr which stains cells according to their RNA content (Fishbane et al., 1997 (link)).
ESR was measured by Westergren using Sedplast ESR system (Polymedco, Cortlandt Manor, NY). Serum iron, serum iron binding capacity were measured automatically using Siemens Flex reagent cartridge DF49A on Dade Behring Dimension RXL clinical chemistry autoanalyser. Serum ferritin was measured using Modular Analytic E170 analyzer. CRP was measured by NycoCard CRP single test from Axis-shield.
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