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6 protocols using irdye680 conjugated anti rabbit igg

1

Western Blot Analysis of IMP Proteins

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Western blots were performed as previously described [10 (link)]. Antibodies used were specific to IMP1 (Santa Cruz), IMP2/p62 [6 (link), 10 (link)] detecting both isoforms, IMP3 (Proteintech), and α-tubulin (#T9026, Sigma, Germany). IRDye680-conjugated anti-rabbit IgG (LiCor Bioscience, Germany) and IRDye800-conjugated anti-mouse IgG (LiCor) were used as secondary antibodies. Signal intensities were determined by using the Odyssey infrared imaging system (LiCor).
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2

Western Blot Quantification Protocol

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Cell lysates were separated by SDS-PAGE (Novex 10–20% or 4–20% gradient gels (Invitrogen)) and transferred onto nitrocellulose membranes, 0.2 μm (Bio-Rad). The membranes were blocked for 1 hr at room temperature (5% nonfat dry milk in PBS, 0.1% Tween 20) and immunoblotted overnight at 4°C, with specific antibodies as indicated. Antibody binding was detected using IRDye800-conjugated anti-mouse IgG (catalog #610-102-041 RRID:AB_2614830; 1:10.000; Rockland) or IRDye680-conjugated anti-rabbit IgG (catalog #926–68021 RRID:AB_10706309; 1:10.000 LI-COR, Bioscience). Blots were analyzed and quantified using an Odyssey Infrared Imaging System (LI-COR Bioscience, Image Studio Lite version 3.1, RRID:SCR_013715). Anti-rabbit pS88 (G446), and anti-rabbit pS46 (RU1102) for ARPP-16 were detected using peroxidase-conjugated secondary antibody (catalog #PI-1000 RRID:AB_2336198; 1:300, Vector Laboratories,Inc.) coupled with a chemiluminescence detection system (Pierce, ThermoScientific).
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3

Protein Extraction and Immunoblotting Protocol

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Crude protein extracts were prepared using a Trichloroacetic Acid (TCA) precipitation as described by (Peter et al., 1993 (link)). Briefly 5 ml of cells were harvested by centrifugation for 2 min at 3500 rpm. Cell pellets were resuspended in 0.5 ml of ice-cold buffer A (20 mM Tris (pH 8.0), 50 mM NH4OAc, 0.5 mM EDTA, 0.2 mM phenylmethylsulfonyl fluoride) and were immediately mixed with 0.5 ml of ice cold 20% trichloroacetic Acid. Cells were then vortexed in the presence of glass beads for 2 × 0.5 min, with 2 min cooling on ice in-between. The supernatant was the placed into a new tube, proteins pelleted by centrifugation for 10 min at 12,000 rpm, and the pellet resuspended in trichloroacetic acid-sample buffer (3% SDS, 100 mM Tris base pH 11, 3 mM DTT). Extracts were then boiled for 10 min and insoluble cell debris pelleted by centrifugation for 2 min at 12,000 rpm. Proteins were separated by SDS-PAGE polyacrylamide gene electrophoresis followed by immunoblotting to a nitrocellulose membrane. Immunoblots were probed with anti-GFP (G1544, Sigma) and anti-Act1 (ab3280–500) primary antibodies and IRDye800CW-conjugated anti-mouse IgG (LI-COR) and IRDye680-conjugated anti-rabbit IgG (LI-COR) secondary antibodies. An Odyssey infrared image system (LI-COR) was used for visualization and analysis of signal intensities.
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4

Western Blot Analysis of Complemented Strains

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Intracellular samples of the complemented strains were subjected to SDS-PAGE followed by Western blotting. Immunoblots were probed with mouse anti-c-Myc (Thermo; 1:500), rabbit anti-TgGRA7 (1:5,000–John Boothroyd Lab), in Odyssey LI-COR blocking buffer (LI-COR Biosciences), followed by incubation with IRDye 680-conjugated anti-rabbit IgG and IRDye 800-conjugated anti-mouse IgG (LI-COR), each at 1:20,000 in PBS containing 0.5% BSA. The blots were washed in PBS and scanned using an Odyssey CLx infrared imager (LI-COR). Images were processed using Image Studio software (LI-COR).
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5

Western Blot Analysis of Parasite Proteins

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Protein samples from 107 parasites were resolved by SDS–PAGE and transferred to polyvinylidene fluoride (PVDF) as previously described (Carey et al., 2004 (link)). Blots were probed with rabbit anti-TgMyoA antiserum at 1:1000, mouse anti-TgGRA8 at 1 μg/ml, and mouse anti-FLAG antibody (Sigma-Aldrich) at 1:7500 in PBS containing 0.5% (vol/vol) bovine serum albumin (BSA), followed by incubation with IRDye 680–conjugated anti-rabbit IgG, IRDye 800–conjugated anti-mouse IgG, and IRDye 680–conjugated goat anti-mouse IgG1 at (1:20,000; LI-COR Biosciences, Lincoln, NE), each at 1:20,000 in PBS containing 0.5% BSA. Blots were then washed in PBS and scanned using an Odyssey CLx Infrared Imaging System (LI-COR Biosciences). Images were processed using Image Studio software (LI-COR Biosciences).
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6

Quantitative Protein Analysis by SDS-PAGE and Western Blot

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Total protein was extracted from exponentially growing cells at passage 8–10 and 40 g/mL were resolved by SDS-PAGE using a 4–15% gradient gel (Bio-Rad Laboratories). After transfer and blocking overnight at 4 °C in Odyssey Blocking Buffer (Li-Cor, Lincoln, NE, USA) proteins were detected by primary antibodies against BRCA1 [2A-9] (1:500, kindly provided by Stephen Smith, Leibnitz Institute, Jena, Germany), ATR [N-19] (Santa Cruz, St. Cruz, CA, USA, 1:1000), CHK1 [2G1D5] (Cell Signaling, Danvers, MA, USA, 1:750), RAD51 [14B4] (1:2.000, GeneTex, Irvine, CA, USA), MRE11A [12D7] (Abcam, Cambridge, UK, 1:500), pCHK1 [Ser296] (Cell Signaling, 1:1000), -actin [AC-74] (1:50.000, Sigma, St. Louis, MO, USA). Primary antibodies were detected with IRDYE 680 conjugated anti-mouse IgG, IRDYE 800 conjugated anti-rabbit IgG (Li-Cor, 1:7500), IRDYE 680 conjugated anti-rabbit IgG (Licor, 1:7.500 or 15.000) or IRDYE 800 conjugated anti-mouse IgG (Li-Cor 1:7.500 or 15.000). Quantitative and qualitative analysis was done by using Li-Cor Odyssey (Li-Cor, Lincoln, NE, USA).
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