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6 protocols using av 700 mhz nmr spectrometer

1

Spectroscopic and Mass Spectrometric Characterization

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Optical rotations were measured using a 341 Polarimeter (Perkin-Elmer, Inc. Norwalk, CT, USA). CD spectra were measured on a Chirascan circular dichroism spectrometer (Applied Photophysics, Ltd. Surrey, UK). UV spectra were measured on a U-2600 spectrophotometer (Shimadzu, Tokyo, Japan). 1D and 2D NMR spectra were recorded on a Bruker AV-700 MHz NMR spectrometer (Bruker Biospin GmbH, Rheinstetten, Germany) with tetramethylsilane (TMS) as the internal standard. Mass spectrometric data were obtained on a quadrupole-time-of-flight mass spectrometry (Bruker Maxis 4G, Rheinstetten, Germany) for high-resolution electrospray ionization mass spectrometric (HRESIMS). Column chromatography was performed using silica gel (100–200 mesh, Jiangyou Silica gel development, Inc., Yantai, China), Sephadex LH-20 (Amersham pharmacia Biotech AB, Staffanstorp, Sweden).
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2

Comprehensive Analytical Characterization

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Optical rotations were measured using a 341 Polarimeter (Perkin-kinelmer, Inc., Norwalk, CT, USA). The CD spectra were measured on a Chirascan circular dichroism spectrometer (Applied Photophysics, Ltd., Surrey, UK). UV spectra were measured on a U-2900 spectrophotometer (Hitachi, Tokyo, Japan). IR spectra were recorded on an Affinity-1 FT-IR spectrometer (Shimadzu, Tokyo, Japan). The 1D and 2D NMR spectra were recorded on a Bruker AV-700 MHz NMR spectrometer (Bruker Biospin GmbH, Rheinstetten, Germany) with tetramethylsilane (TMS) as the internal standard. Mass spectrometric data were obtained on a quadrupole-time-of-flight mass spectrometry (Bruker Maxis 4G) for HRESIMS. Column chromatography was performed while using silica gel (100–200 mesh, 300–400 mesh; Jiangyou Silica gel development, Inc., Yantai, China), Sephadex LH-20 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden). HPLC was carried out while using a reversed-phase column (Phenomenex Gemini C18, 250 mm × 4.6 mm, 5 μm; Phenomenex, Torrance, CA, USA) with UV detection at 270 nm and 320 nm. Semi-preparative HPLC was performed on a Hitachi HPLC station (Hitachi-L2130) with a Diode Array Detector (Hitachi L-2455) using a Phenomenex ODS column (250 mm × 10.0 mm, 5 mm; Phenomenex, Torrance, CA, USA) with UV detection at 320 nm.
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3

Kinetic Assay for Prolyl Hydroxylation

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Assay mixtures contained DdPhyA (10 μm) or TgPhyA (10 μm), DdSkp1 peptide (100 μm) or TgSkp1 peptide (100 μm), (NH4)2Fe(II)(SO4)2 (10 μm), sodium l-ascorbate (100 μm), and 2OG (50 μm), in HEPES (100 mm), pH 7.6. Reactions were incubated at 37 °C for 1 h under normoxic conditions and then quenched using an equal volume of 1% (v/v) formic acid. The hydroxylated peptides were partially purified using a Sep-Pak Cartridge (Waters®). Samples were dried under vacuum, then dissolved in D2O to a concentration of 4 mm prior to 2-D total correlation spectroscopy 1H analysis using a Bruker AV700 MHz NMR spectrometer equipped with an inverse TCI 1H/13C/15N CryoProbe. 4 scans were acquired at the resolution of 512 data points in the indirect detected dimension. Mixing time was 100 ms.
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4

Spectroscopic Characterization of Compounds

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Optical rotations were measured using a 341 Polarimeter (Perkin-Elmer, Inc., Norwalk, CT, USA). UV spectra were measured on a U-2900 spectrophotometer (Hitachi, Tokyo, Japan). IR spectra were recorded on an Affinity-1 FT-IR spectrometer (Shimadzu, Tokyo, Japan). Melting points were measured using an SGW®X-5 micro melting point meter (Shanghai INESA Physico optiacal Instrument Co., Ltd., Shanghai, China). 1D and 2D NMR spectra were recorded on a Bruker AV-700 MHz NMR spectrometer (Bruker Biospin GmbH, Rheinstetten, Germany) with tetramethylsilane (TMS) as the internal standard. Mass spectrometric data were obtained on a quadrupole-time-of-flight mass spectrometer (Bruker Maxis 4G) for HRESIMS. Column chromatography was performed using silica gel (100–200 mesh, 300–400 mesh; Jiangyou Silica gel development, Inc., Yantai, China), Sephadex LH-20 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden). HPLC was carried out while a reversed-phase column (Phenomenex Gemini C18, 250 mm × 4.6 mm, 5 μm; Phenomenex, Torrance, CA, USA) with UV detection at 254 nm and 360 nm. Semi-preparative HPLC was performed on a Hitachi HPLC station (Hitachi-L2130) with a Diode Array Detector (Hitachi L-2455) using a Phenomenex ODS column (250 mm × 10.0 mm, 5 μm; Phenomenex, Torrance, CA, USA) with UV detection at 360 nm.
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5

High-Resolution Mass Spectrometry and NMR Analysis

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HR-ESI-MS was obtained on a Bruker maXis ESI-QTOF mass spectrometer (Bruker Daltonics, Bremen, Germany) in the positive-ion mode. LR-ESI-MS was recorded on a Bruker amaZon SL mass spectrometer (Bruker Daltonics, Bremen, Germany) in both the positive- and negative-ion modes. One- and two-dimensional NMR spectra were measured on a Bruker AV-700 MHz NMR spectrometer (Bruker Scientific Technology Co. Ltd., Karlsruhe, Germany). UV spectra were recorded on a UV-2600 UV-Vis spectrophotometer (SHIMADZU, Kyoto, Japan) and optical rotations determined on an MCP 500 modular circular polarimeter (Anton Paar GmbH, Seelze, Germany) with a 1.0 cm cell at 25 °C. Preparative HPLC was performed on a Waters 2535 pump equipped with a YMC C18 reversed-phase column (250 × 10 mm i.d., 5 μm, Kyoto, Japan) and a 2998 photodiode array detector coupled with a 2424 evaporative light scattering detector (Waters Corporation, Milford, NY, USA). For column chromatography, silica gel (100–200 mesh, Qingdao Mar. Chem. Ind. Co. Ltd., Qingdao, China) and C18 reversed-phase silica gel (ODS-A-HG 12 nm, 50 µm, YMC, Kyoto, Japan) were employed.
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6

Recombinant 15N-FGF2 Conformational Analysis

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Recombinant 15N-labeled His-tagged FGF2-C77/95S (pQE30) was expressed in Escherichia coli W3110Z1 cells using M9 minimal medium with 15NH4Cl as the sole nitrogen source. Purification was performed as described above. Purified FGF2-C77/95S was diluted in 25 mM HEPES buffer (pH 7.4), containing 150 mM KCl and 10% D2O, to a final concentration of 160 µM. For the IP3 and heparin disaccharide titration experiments, 500 µl of 80 µM FGF2-C77/95S were titrated with defined volumes of 80 µM FGF2-C77/95S and either 900 µM IP3 (Sigma 74148, Sigma Aldrich, St. Louis, MO) or heparin disaccharide (Sigma H9267). The endpoint of the IP3 titration was further titrated with defined volumes of 80 µM FGF2-C77/95S and 900 µM heparin disaccharide and vice versa. NMR spectra were recorded on a Bruker AV 700 MHz NMR spectrometer equipped with a 5 mm triple resonance cryo-probe at 300 K. For each titration step 2D 15N1H-HSQC spectra were recorded with 1024 points in the 1H dimension and 96 points in the 15N dimension and averaged over eight transients. Spectra were processed with TopSpin (Bruker, Billerica, MA) using CcpNmr Analysis software (Vranken et al., 2005 (link)). Signals were assigned using previously published data (accession code: 1BLA; (Moy et al., 1996 (link), 1995 (link))) Chemical shift differences were calculated using the equation Δδ=(δH)2+(0,15δN)2 .
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