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5 protocols using pde4d

1

Western Blot Analysis of Apoptosis-Related Proteins

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Following extracting proteins from OGD/R-induced PC-12 cells by RIPA buffer containing protease inhibitors, the BCA Protein Assay Kit (Abcam) was used to detect the protein concentrations. Then, proteins were separated by 10% SDS-PAGE and transferred into PVDF membranes. At room temperature, the blocking was performed using 5% bovine serum albumin (BSA). After blocking, membranes were incubated overnight at 4°C with primary antibodies against Bcl-2 (1:1,000; Abcam), Caspase-3 (1:1,000; Abcam), PDE4D (1:1,000; Abcam), and β-actin (1:1,000; Abcam). Then, tris-buffered saline Tween-20 (TBST) was used to wash the membranes for three times. Subsequently, at room temperature, the secondary antibody HRP-conjugated anti-mouse IgG (1:5,000; Santa Cruz, Waltham, MA, USA) was added to incubate for 1 h. β-actin was used as the internal reference. The membranes were developed by chemiluminescence reagents (Thermo Fisher Scientific) under a Gel-Pro analyzer (version 4.0, USA).
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2

Western Blot Analysis of Aortic Tissues

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Protein was extracted from the aortic tissues or RASMCs in a lysis buffer. Equal quantities of protein extract (30 μg per lane) were separated by 8, 10, or 12% SDS–PAGE and transferred to a polyvinylidene fluoride membrane (Merck, Cat#: IPVH00010). The target protein was probed with numerous antibodies: PDE4A (1:1000, Thermo Fisher, Cat#:PA5-115730), PDE4B (1:1000, Cell Signaling Technology, Cat#: 72096S), PDE4C (1:1000, Thermo Fisher, Cat#: PA5-106624), PDE4D (1:1000, Abcam, Cat#: ab171750), AMP-activated protein kinase (AMPK; 1:1000, Cell Signaling Technology, Cat#: 2532S), Phospho-AMPK (1:1000, Cell Signaling Technology, Cat#: 2535S), myosin phosphatase targeting subunit 1 (MYPT1; 1:1000, Cell Signaling Technology, Cat#: 2634S), Phospho-MYPT1 (1:500, Cell Signaling Technology, Cat#: 5163S), MLC (1:1000, Cell Signaling Technology, Cat#: 8505S), and Phospho-MLC (1:1000, Cell Signaling Technology, Cat#: 3675S), respectively. Immunoblotting of the housekeeping protein GAPDH (1:5000, Proteintech, Cat#: 60004-1-Ig) was performed to ensure equal protein loading. Immunoreactive bands were visualized with SuperSignal™ West Pico PLUS Chemiluminescent Substrate (Pierce, Cat#: 34577). The protein expression was measured by analyzing the relative protein band intensity with Image-Pro Plus 6.0 software.
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3

Quantitative Western Blot Analysis

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Western blotting was performed as previously described. Proteins bound to the PDVF membrane were analyzed by western blotting using primary antibodies against PDE4d (Abcam, USA), GAPDH (Arigo, Taiwan), HDAC1 (CST, USA) and DYKDDDK Tag (GenScript, China). Band intensity was analyzed and quantified using a G-BOX imaging system (Syngene, UK).
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4

Comprehensive Protein Expression Analysis

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Whole cell or nuclear lysates prepared as described before (Ramakrishnan et al., 2015 (link)) were separated by SDS-PAGE, transferred to nitrocellulose membrane and probed overnight at 4C with antibodies for pCREB, CREB, pERK, ERK, pAKT, AKT, pSTAT3, pPKA substrate, STAT3, PKA-R1α/β, PKA-Cα (Cell Signaling, Danvers, MA), Lamin B1, PDE4D (Abcam,), Lamin A/C (Active motif), G6pase, Pepck, AKAP-12, GAPDH (Santa Cruz, Dallas, TX) and HIF2α (Novus, Littleton, CO) and, PKA-RII (a kind gift from Dr. Michael Uhler, University of Michigan). Densitometry of the immunoblots were done using image-J software and expressed as fold change from the control or vehicle treated samples.
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5

Cardiomyocyte Apoptosis and Oxidative Stress

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Rat cardiomyocytes (H9c2 cells) were purchased from the Cell Bank of the Chinese Academy of Sciences. The reagents and instruments used in this study are Trizol extraction solution (Thermo Fisher), reverse transcription kit (Thermo Fisher), Lipofectamine 3000 transfection reagent (Thermo Fisher), RIPA lysate, one-step TUNEL apoptosis assay kit (green fluorescence) (Shanghai Beyotime Biotechnology), DMEM medium (Hyclone, USA), fetal bovine serum (Gibco, USA), reactive oxygen species assay kit (Beijing Solarbio Life Sciences), PDE4D (Abcam, UK), cAMP (CST, USA), PKA (CST, USA), β-actin and HRP-labeled secondary antibody (Shanghai Beyotime Biotechnology), electrophoresis and transfer membrane reagents (Shanghai Beyotime Biotechnology), ECL luminescent solution (Millipore, USA), fluorescence microscope (Thermo Fisher), transfer electrophoresis tank (Bio-Rad, USA), and CO2 cell incubator (Thermo Fisher).
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