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5 protocols using coomassie brilliant blue solution

1

Protein Quantification of Leukemia Cells

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The IC50 of TQ; 5.5 µM and 15 μM were used to treat MV4-11 and K562 cells, respectively, for 48 h. After that, the treated and untreated cells were lysed with RIPA buffer containing a protease inhibitor cocktail (Nacalai Tesque, Kyoto, Japan) and phosphatase inhibitor solution (Nacalai Tesque, Kyoto, Japan). The protein concentrations were measured by Bradford protein assay [49 (link)], using bovine serum albumin (BSA) and Coomassie brilliant blue (CBB) solution from Nacalai tesque, Inc. (Kyoto, Japan).
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2

HEK293 Cell Culture and Protein Analysis

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Dulbecco’s modified Eagle’s medium (DMEM), LPS (E. coli O128:B12), and dexamethasone (Dex) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Fetal bovine serum, antibiotics, and cloning vectors were purchased from Life Technologies (Carlsbad, CA, USA). HEK293 cells were obtained from the American Type Culture Collection (Manassas, VA, USA). The anti-mouse LCN2 antibody was purchased from Abnova (Taipei, Taiwan). Goat anti-rabbit IgG was obtained from GE Healthcare Life Sciences (Buckinghamshire, UK). Complete Mini, EDTA-free protease inhibitor cocktail was from Roche (Mannheim, Germany). The DNA ligation kit and EX Taq were purchased from Takara Bio (Shiga, Japan). PNGase F, Endo H, and Neuraminidase (NA) were obtained from New England BioLabs (Herts, UK). Coomassie brilliant blue (CBB) solution and the Rapid Stain CBB kit were procured from Nacalai Tesque (Kyoto, Japan). All other chemicals were purchased from Wako Pure Chemical Industries (Osaka, Japan).
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3

Evaluating Ternary Complex Transfection Efficiency

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DC2.4 cells were placed into 24-well plates (Corning Inc., Corning, NY, USA) at a density of 1.0 × 104 cells/well and cultivated in 500 µL culture medium. After 24 h of pre-incubation, the cells were treated with 0.25 μg/mL, 0.5 μg/mL, 1 μg/mL, and 2 μg/mL of each pDNA ternary complex for 2 h. After 22 h of incubation, the cells were washed with phosphate-buffered saline and then lysed in 100 µL lysis buffer (pH 7.8; 0.1 M Tris/HCl buffer containing 0.05% Triton X-100 and 2-mM ethylenediaminetetraacetic acid). A protein assay Coomassie brilliant blue solution (Nacalai tesque Inc., Kyoto, Japan) was used to determine the protein content of the lysate, with BSA as a standard, and a microplate reader (Infinite-200Pro M-Plex, Tecan Japan Co., Ltd., Kanagawa, Japan) at 595 nm was used to measure absorbance. A PicaGene luminescence kit and a luminometer (Lumat LB 9507; EG & G Berthold, Bad Wildbad, Germany) were used to determine luciferase activity. Luciferase activity is shown as relative light units (RLUs) per mg protein.
To assess the time-dependent transfection activity of the promoters, DC2.4 cells were treated with 2 μg/mL of each pDNA ternary complex for 2 h as described above. Luciferase activity was measured at 6, 12, 24, and 48 h after treatment.
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4

Isolation and Characterization of Sea-ICR Mice

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Sea-ICR mice (5 weeks, male) were obtained from Kyudo Co., Ltd. (Saga, Japan). Blue Sepharose 6 Fast Flow, HiTrap Phenyl HP column and PD-10 desalting column were obtained from GE Healthcare (Tokyo, Japan). Chloral hydrate was obtained from Sigma (Tokyo, Japan). Diff-Quick reagents were purchased from Kokusai Shiyaku (Kobe, Japan). Coomassie Brilliant Blue solution and HistoVT One were obtained from Nacalai Tesque (Kyoto, Japan). Interferon-γ (IFN-γ) ELISA kit was purchased from Biolegend (San Diego, CA, USA). Mayer’s hematoxylin, a 1% eosin alcohol solution, mounting medium for histological examinations (malinol) were from Muto Pure Chemicals (Tokyo, Japan). 4′,6-Diamidino-2-phenylindole (DAPI) was obtained from Dojindo (Kumamoto, Japan). All other chemicals were of the highest analytical grades available.
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5

Protein Identification by Trypsin Digestion

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After separation of proteins by SDS-PAGE, the gels were stained at room temperature for 2 h with Coomassie Brilliant Blue solution (11642; Nacalai Tesque). The stained bands near 16 kDa were excised and soaked in 50 mM Tris–HCl, pH 8.0, containing 50% acetonitrile for 30 min. The gel was dried in a Speed-Vac (Savant) and incubated in 50 mM triethylammonium bicarbonate containing proteomics grade trypsin (T7575; Sigma-Aldrich) at 37 °C for 20 h. The digests were extracted from the gel with 100–200 μL of 0.1% TFA containing 60% acetonitrile. These extracts were evaporated in a Speed-Vac and stored at − 80 °C until assayed.
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