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2 protocols using acetyl histone h3 lys23

1

Chromatin Immunoprecipitation Assay for Smad Signaling

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Chromatin was prepared from 1 × 107 CD4+ T cells isolated from C57BL/6 mice, Cd4Cre;Smad2fl/fl mice, Smad3−/− mice and the littermate control mice under TH17-polarizing condition for 3–4 days. Immunoprecipitation was performed with antibodies (1:50 dilution) against Smad2 (Cell Signaling Technology, Cat. no. 5339), Smad3 (Cell Signaling Technology, Cat. no. 9523), phospho-Smad3C S423/425 (Cell Signaling Technology, Cat. no. 9520), Smad4 (Santa Cruz, Cat. no. sc-7966), STAT3 (Santa Cruz, Cat. no. sc-7179), tri-methyl histone H3 Lys4 (Cell Signaling Technology, Cat. no. 9751), tri-methyl histone H3 Lys27 (Cell Signaling Technology, Cat. no. 9733), acetyl histone H3 Lys23 (Millipore, Cat. no. 17–10112) and PIAS3 (Santa Cruz) using ChIP kit (Cell Signaling Technology) according to the manufacturer's protocol. Immunoprecipitated DNA released from the crosslinked proteins was quantitated with real-time PCR using the primers (Supplementary Table 3) and was normalized to input DNA.
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2

Quantifying Histone Modifications via Immunoblot and ELISA

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Extracted histones were subjected to immunoblot analysis for H3/H4 acetylation and methylation marks using antibodies to acetyl-Histone H3 Lys4 (ABE223; Millipore), acetyl-Histone H3 Lys14 (04-1044; Millipore), acetyl-Histone H3 Lys18 (AB1191; Abcam), acetyl-Histone H3 Lys23 (07-360; Millipore), acetyl-Histone H4 Lys5 (07-327; Millipore), acetyl-Histone H4 Lys8 (61103; Active Motif), acetyl-Histone H4 Lys12 (07-595; Millipore), acetyl-Histone H4 Lys16 (07-329; Millipore), monomethyl-Histone H3 Lys4 (07-436; Millipore), monomethyl-Histone H3 Lys9 (ABE101-S; Millipore), unmethylated-Histone H3 Lys9 (MABE263; Millipore), monomethyl-Histone H3 Lys27 (07-448; Millipore), total Histone H3 (AB18521; Abcam) and total Histone H4 (AB17036; Abcam). Each measured protein was normalized to total H3 or H4. The chemiluminescent blots were imaged with a ChemiDoc MP imager (Bio-Rad) and quantified using Image software (NIH, Bethesda, MD). At the same time, an EpiQuik Histone H3 Modification Multiplex Assay Kit (P-3100; EpiGentek) was used to detect and quantify various H3 methylations simultaneously in an ELISA-like format following the manufacturer’s recommended protocols.
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