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7 protocols using rictor

1

Palbociclib Sensitivity in Reverse Transfected Cells

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Cells were reverse transfected with siRNA using Dharmacon Human siGENOME siRNA: cyclin D1 (M-003210-05-0005), cyclin E1 (M-003213-02-0005), Raptor (L-004107-00-0005), Rictor (L-016984-00-0005) and non-targeting siRNA (D-001810-10-05) or CDK2 (ID# 103569) and CDK4 (ID# 103747) from Thermo Fisher. Transfection was performed using Lipofectamine RNAiMax Transfection Reagent (Invitrogen, 13778150) according to manufacturer’s protocol. Following 24-hour transfection, cells were incubated with palbociclib or vehicle control at the concentration and times indicated. Proliferation was determined using a chemiluminescent BrdU ELISA assay (Sigma 11669915001) as described by the manufacturer. Luminescence was read on a BioTek Synergy 2 plate reader. Parallel experiments were performed using immunoblot analysis in which cells were exposed to 200 nM palbociclib up to 48-hour following reverse transfection.
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2

Isolation and Transfection of Primary Human Endothelial Cells

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Primary human umbilical vein endothelial cells (HUVEC) were isolated from umbilical cords obtained from local hospitals under the University of California, Irvine, Institutional Review Board approval and were cultured as previously described [4 (link)]. Normal human lung fibroblasts (NHLFs) were purchased from Lonza and cultured in M199 containing 10% FBS. Human cardiac microvascular endothelial cells (HMVECs) were purchased from Lonza and maintained similarly to HUVEC. The BALB/c colon carcinoma cell line CT26.WT (ATCC) was cultured in RPMI (Life Technologies) supplemented with 10% fetal bovine serum.
HUVEC were transfected with siRNA using Lipofectamine 2000 in Opti-MEM (Invitrogen). The sequences of the siRNA to human raptor and Rictor (Thermo Scientific) are as follows: Raptor 5′GGGAGAAGCUGGAUUAUUUUU3′ and Rictor 5′GGAAAUAAGGCGAGGUCUAUU3′. siRNA targeting Rheb and Sin1 were ON-TARGETplus siRNA from Thermo Scientific. A non-targeting scrambled control siRNA (Thermo Scientific) was used in all experiments to assess sequence independent effects of siRNA delivery. Transfection efficiency was determined by Western blot (see below).
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3

Knockdown of Raptor and Rictor in H9c2 Cells

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The following siRNAs were procured from Santa Cruz Biotechnology: Raptor siRNA (sc-270140); Rictor siRNA (sc-270141). The H9c2 cells were transfected with either Raptor or Rictor siRNA (20 nM) or control siRNA using Lipofectamine reagent (ThermoFisher, Waltham, MA, USA), as described earlier [61 (link)] with some modifications. The siRNA duplex, as well as Lipofectamine 2000 reagent, was diluted with Opti-MEM (Gibco, Grand Island, NY, USA) and incubated for 5–10 min. Next, both solutions were mixed together, and incubated for 15–20 min. Subsequently, the above siRNAs mixture was added to the cells. All follow-up treatments were performed after 24 h of transfection.
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4

Palbociclib Sensitivity in Reverse Transfected Cells

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Cells were reverse transfected with siRNA using Dharmacon Human siGENOME siRNA: cyclin D1 (M-003210-05-0005), cyclin E1 (M-003213-02-0005), Raptor (L-004107-00-0005), Rictor (L-016984-00-0005) and non-targeting siRNA (D-001810-10-05) or CDK2 (ID# 103569) and CDK4 (ID# 103747) from Thermo Fisher. Transfection was performed using Lipofectamine RNAiMax Transfection Reagent (Invitrogen, 13778150) according to manufacturer’s protocol. Following 24-hour transfection, cells were incubated with palbociclib or vehicle control at the concentration and times indicated. Proliferation was determined using a chemiluminescent BrdU ELISA assay (Sigma 11669915001) as described by the manufacturer. Luminescence was read on a BioTek Synergy 2 plate reader. Parallel experiments were performed using immunoblot analysis in which cells were exposed to 200 nM palbociclib up to 48-hour following reverse transfection.
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5

Antibody-based Analysis of Cell Signaling

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The antibodies used in western blot analysis were cyclin D1 (sc-20044, Santa Cruz), b-actin (sc-47778, Santa Cruz), Akt1 (sc-5298, Santa Cruz), pAkt1 Ser473 (#9018, CST), pAkt1/2/3 Ser473 (sc-7985-R, Santa Cruz), TSC2 (sc-893, Santa Cruz), pTSC2 Ser939 (ab59269, Abcam), FKHR (sc-11350, Santa Cruz), pFKHR Ser319 (sc-101682, Santa Cruz), cyclin A2 (ab16726, Abcam), Bad (sc-8044, Santa Cruz), pBad Ser136 (ab28824, Abcam), Rictor (SC#271081, H11) and phosphorylated RB (S780) (Cell Signaling). Mouse anti-FLAG (M2), mouse anti-vinculin (hVIN-1) antibodies were from Sigma (St. Louis, MO). The antibody used for Immunoprecipitation was HA (sc-805, Santa Cruz). The antibodies used for immunohistochemistry and immunofluorescence were cyclin D1 (sc-20044, Santa Cruz), for Akt Ser473 phosphorylation (pAkt1/2/3 Ser473) (sc-7985-R, Santa Cruz), for pAkt1 Ser473 (#9018, CST), TSC2 (sc-893, Santa Cruz), pTSC2 Ser939 (ab59269, Abcam), pFKHR Ser319 (sc-101682, Santa Cruz), pBad Ser136 (ab28824, Abcam), cyclin A2 (ab16726, Abcam), paxillin (05–417, Millipore-Sigma), Rictor (H278, sc-99004), tyrosine phosphorylated paxillin (44–722G, Thermo Fisher), PACSIN2 (10518–2-AP, Proteintech).
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6

Antibody-based Analysis of Cell Signaling

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The antibodies used in western blot analysis were cyclin D1 (sc-20044, Santa Cruz), b-actin (sc-47778, Santa Cruz), Akt1 (sc-5298, Santa Cruz), pAkt1 Ser473 (#9018, CST), pAkt1/2/3 Ser473 (sc-7985-R, Santa Cruz), TSC2 (sc-893, Santa Cruz), pTSC2 Ser939 (ab59269, Abcam), FKHR (sc-11350, Santa Cruz), pFKHR Ser319 (sc-101682, Santa Cruz), cyclin A2 (ab16726, Abcam), Bad (sc-8044, Santa Cruz), pBad Ser136 (ab28824, Abcam), Rictor (SC#271081, H11) and phosphorylated RB (S780) (Cell Signaling). Mouse anti-FLAG (M2), mouse anti-vinculin (hVIN-1) antibodies were from Sigma (St. Louis, MO). The antibody used for Immunoprecipitation was HA (sc-805, Santa Cruz). The antibodies used for immunohistochemistry and immunofluorescence were cyclin D1 (sc-20044, Santa Cruz), for Akt Ser473 phosphorylation (pAkt1/2/3 Ser473) (sc-7985-R, Santa Cruz), for pAkt1 Ser473 (#9018, CST), TSC2 (sc-893, Santa Cruz), pTSC2 Ser939 (ab59269, Abcam), pFKHR Ser319 (sc-101682, Santa Cruz), pBad Ser136 (ab28824, Abcam), cyclin A2 (ab16726, Abcam), paxillin (05–417, Millipore-Sigma), Rictor (H278, sc-99004), tyrosine phosphorylated paxillin (44–722G, Thermo Fisher), PACSIN2 (10518–2-AP, Proteintech).
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7

Retinal Protein Expression Analysis

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Whole retinas were rapidly isolated and homogenized in ice-cold lysis buffer: 150 mM NaCl, 20 mM Tris, pH 8.0, 1% NP-40, 0.5% Na deoxycholate, 0.1% SDS, 1 mM EDTA, supplemented with 2 mM NaVO3, and protease and phosphatase inhibitors. Protein samples were resolved on SDS polyacrylamide gels and transferred to nitrocellulose membranes (Bio-Rad Life Science). Blots were incubated with each of the following antibodies: phospho-Akt (Ser473, 1:2000, Cell Signaling Technology), total Akt (1:2000, Cell Signaling Technology), Rictor (1:2000, Thermo Fisher Scientific), Raptor (0.96 μg/ml, Abcam), or β-actin (0.5 μg/ml, Sigma-Aldrich), followed by anti-rabbit or anti-mouse peroxidase-linked secondary antibodies (0.5 μg/ml, GE Healthcare). Densitometric analysis was performed using ImageJ (http://imagej.nih.gov/ij/) on scanned autoradiographic films obtained from five independent western blots, each carried out using retinal samples from different experimental groups.
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