The largest database of trusted experimental protocols

7 protocols using phosstop inhibitor cocktail

1

Immunoprecipitation and Mass Spectrometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed and total protein was extracted with probe sonication (10 s, Setting 3, Branson Sonifier 450) in NP40 (1% (v/v) Nonidet P-40 in TBS (50 mm Tris-HCl, pH 7.5, 150 mm NaCl) or RIPA (1% (v/v) Nonidet P-40, 0.5% (w/v) sodium deoxycholate, 0.1% (w/v) SDS in TBS) buffer containing 2 mM EDTA, 10 mM N-ethylmaleimide, Complete protease inhibitor cocktail (Roche) and PhosStop inhibitor cocktail (Roche). Cellular debris was pelleted at 16 000g (30 min at 4°C). Protein concentration was estimated using the Pierce BCA Reagent (Pierce Biotechnology). Typically, 1 µg of antibody per 500 µg of protein extract in NP40 buffer was used for immunoprecipitations. Protein A/G magnetic beads (Pierce) were used to capture the antibody : protein complex. Immunoprecipitation mixtures were washed with TBS containing 1% (v/v) NP40 (3×) to remove non-specifically bound proteins, and then resuspended in either (i) E3 ligase reaction buffer or (ii) 100 mM ammonium bicarbonate pH 8.0 for in-solution trypsin digestion and LC–MS/MS analyses. Triplicate immunoprecipitations were carried out from three biological transfected cell culture replicates.
+ Open protocol
+ Expand
2

Immunoblot Analysis of HeLa Cell Fractions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The immunoblot analysis of BMDM and THP-1 cell lysates were performed as described (18 (link)). HeLa cells were seeded in 6-well plate at 3.0×105 cells/well 36–40 hours prior to collection and preparation of cell lysates. Following the indicated treatments, HeLa cells were lysed with a buffer consisting of 25 mM HEPES, pH 7.4, 4% glycerol, 0.5 % (vol/vol) NP-40, 150 mM NaCl, 2mM CaCl2, protease inhibitor cocktail, and a PhosSTOP inhibitor cocktail (Roche Applied Sciences). Lysates were shaken at 4 °C for 30 minutes, transferred to Eppendorf tubes, and centrifuged at 10,000 rpm for 10 minutes at 4°C. The supernatant corresponds to cytosolic fraction. Using the same lysis buffer, the pellet was resuspended, washed and centrifuged twice at 5000 rpm for 5 minutes. After which, the pellet was resuspended with a lysis buffer including 0,5% SDS and incubated for 30 minutes at 4 °C, which corresponds to the nuclear fraction. The samples were subjected to 4–20% SDS-PAGE and analyzed by immunoblotting.
+ Open protocol
+ Expand
3

Fly Protein Extraction and Proteomic Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples from adult flies were obtained through homogenization of 4 adults per sample using cold RIPA buffer (50 mM Tris, pH 7.4, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS) containing Complete Protease Inhibitor Cocktail and PhosStop inhibitor cocktail (Roche Applied Science).44 (link) Heat-shock protein 70 (Hsp70), a stress-inducible chaperone, stabilizes endosome/lysosomes by inhibiting the membrane permeability.45 (link) To detect endogenous proteins in cathD and its mutations, stable transfected cell lines were pretreated with 5 μM HSP inhibitor I, a potent inhibitor for hsp70 which could sensitize endosomal/lysosomal membrane and enhance potential cytosolic translocation, for 24 h. Cell lysates were prepared by brief sonication in RIPA buffer on ice, followed by centrifugation at 15,000× rpm for 5 min. The concentration of samples was determined by bicinchoninic acid (BCA) assay and equal amounts of proteins were loaded onto 12% SDS-PAGE gels, followed by transferring for Western blotting. Blots were probed overnight at 4 °C with indicated antibodies in Supplementary information, Table S1.
+ Open protocol
+ Expand
4

Immunoblot Analysis of Signal Transduction in CLL

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblot experiments were done as previously described.(40 (link)) Whole cell lysates were made from PBMCs in a RIPA lysis buffer using PhosSTOP inhibitor cocktail and complete Protease Inhibitor Cocktail (Roche Applied Science). In select experiments utilizing LN-resident CLL cells CD19 purification was done using a CD19+ MACS selection kit as described by the manufacture (Miltenyi). Proteins were run on Novex® NuPAGE® sodium dodecyl sulfate-polyacrylamide gel (Invitrogen), and subsequently transferred to polyvinyidene fluoride membranes and immunoblotted using the indicated antibodies and horseradish peroxidase-labeled secondary antibodies (GE Healthcare Biosciences). Primary antibodies used include anti- IRAK1, phospho-STAT3(Y705), total STAT3, phospho-IκBα(S32/36), total IκB and GAPDH (all from Cell Signaling Technologies), and γ-tubulin (Sigma). Images were developed using LAS-4000 imaging system (Fuji Film).
+ Open protocol
+ Expand
5

Cell Lysis and Protein Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded onto 10 cm plates at a density of 1.0 × 106–1.5 × 106 cells. Following experimental treatments, plates were scraped in DPBS containing protease and phosphatase inhibitors (0.5 mM PMSF, 1 μg/mL aprotinin, 1 μg/mL leupeptin, 1 mM Na3VO4). Cells were pelleted and resuspended in RIPA lysis buffer (10 mM Tris–HCl pH 8.0, 150 mM NaCl, 1% sodium deoxycholate, 0.1% SDS, 1% Triton X-100) containing a Roche PhosSTOP inhibitor cocktail in addition to the aforementioned protease and phosphatase inhibitors.
+ Open protocol
+ Expand
6

Immunoblotting Analysis of RV Tissue Lysates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immediately after ex vivo analysis, RV tissue was then washed in ice‐cold saline and snap‐frozen. RV tissue was then homogenized using an Omni international tissue grinder (Thermo Fisher Scientific, Waltham, MA) in ice‐cold RIPA lysis buffer (Thermo Fisher) containing proteinase inhibitor cocktail (EMD Millipore/Sigma‐Aldrich, St. Louis, MO) and PhosStop inhibitor cocktail (Roche, Indianapolis, IN). After homogenization, lysate was sonicated for ten one‐second pulses at 100% power and then centrifuged. The supernatant was saved and used as whole lung lysate. Protein concentration was measured using BCA Protein Assay (Thermo Fisher). Rabbit polyclonal anti‐phospho‐p38MAPK, anti‐total p38MAPK, anti‐bcl2, and anti‐bax (all used at 1:1000, and from Cell Signaling, Danvers, MA) and mouse monoclonal anti‐Vinculin loading control (1:5000; Calbiochem; Billerica, MA) primary antibodies were used, all diluted in Pierce Protein‐Free T20 Blocking Buffer (Thermo Fisher). All antibodies used have been extensively validated (Lin et al. 2005; Bernal‐Mizrachi et al. 2006; Bikkavilli et al. 2008; Tang et al. 2008; Slone et al. 2011; Choi et al. 2016; Jiang et al. 2016; Zhang et al. 2017). Rabbit‐HRP (Cell Signaling) and mouse‐HRP (KPL, Gaithersburg, MD) secondary antibodies were diluted 1:2000 in Pierce Protein‐Free T20 Blocking Buffer (Thermo Fisher). Densitometry was performed using ImageJ.
+ Open protocol
+ Expand
7

Perifusion Analysis of Insulin Secretion

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse pancreatic islets were isolated by collagenase digestion as previously described (44 (link)) from 15-week-old female GIRKO mice given HFD for 4 weeks. After isolation, islets were allowed to recover overnight. Fifty handpicked islets per mouse were loaded into the Biorep Perifusion System with each chamber containing islets belonging to unique individuals. Islets were perifused at a rate of 120 μl/min with Krebs buffer containing 2.8 mmol/L glucose for 20 min, 16.7 mmol/L glucose for 30 min, followed by washout for 6 min, and chased for 20 min with 30 mM potassium chloride as a depolarizing stimulus. Recovered islets were lysed by shearing with a 26 1/2G sterile needle in lysis buffer containing 1% NP-40, 0.05% deoxycholate, 0.1% SDS, 0.2% Sarkosyl, 10% Glycerol, 1 mM DTT, 1 mM EDTA, 10 mM NaF, 50 mM Tris (pH 8.0), 1× Complete protease inhibitor cocktail (Roche), and 1× PhosStop inhibitor cocktail (Roche) in PBS. Secreted insulin was measured using ELISA (Mercodia), and results were normalized to total insulin content in islet lysates.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!